def handle_noargs(self, **options):
if not (options['project_id'] and options['user_id']):
raise CommandError("You must specify both --project and --user")
user = User.objects.get(pk=options['user_id'])
# Set up tracing for the requested project
setup_tracing(options['project_id'], user)
def handle_noargs(self, **options):
if not (options['project_id'] and options['user_id']):
raise CommandError("You must specify both --project and --user")
user = User.objects.get(pk=options['user_id'])
# Set up tracing for the requested project
setup_tracing(options['project_id'], user);
def setUp(self):
"""Create a project and a suer with browse/annotate permissions.
"""
self.client = Client()
admin = User.objects.create(username="******", password="******", is_superuser=True)
project = Project.objects.create(title="Testproject")
self.project_id = project.id
# Set project up for tracing
tracing.setup_tracing(self.project_id, admin)
self.authenticate()
def handle(self, *args, **options):
user = None
user_id = pk=options['user_id']
if user_id is not None:
user = User.objects.get(pk=user_id)
if not user:
from catmaid.apps import get_system_user
user = get_system_user()
logger.info("Using system user account {} (ID: {})".format(user, user.id))
# Set up tracing for the requested project
setup_tracing(options['project_id'], user)
def handle(self, *args, **options):
set_log_level(logger, options.get('verbosity', 1))
user = None
user_id = pk = options['user_id']
if user_id is not None:
user = User.objects.get(pk=user_id)
if not user:
from catmaid.apps import get_system_user
user = get_system_user()
logger.info(f"Using system user account {user} (ID: {user.id})")
# Set up tracing for the requested project
setup_tracing(options['project_id'], user)
def fork(request:HttpRequest, project_id) -> JsonResponse:
"""Attempt to create a new project based on the passed in project ID.
---
parameters:
- name: name
description: Name of new project
required: true
type: string
"""
name = request.POST.get('name')
if not name:
raise ValueError('Need new project name')
current_p = get_object_or_404(Project, pk=project_id)
new_p = get_object_or_404(Project, pk=project_id)
new_p.id = None
new_p.title = name
new_p.save()
# Copy all project-stack links
ps_links = ProjectStack.objects.filter(project=current_p)
for ps in ps_links:
ps.id = None
ps.project = new_p
ps.save()
# Assign read/write/import permissions for new fork
assign_perm('can_browse', request.user, new_p)
assign_perm('can_annotate', request.user, new_p)
assign_perm('can_import', request.user, new_p)
# Creat basic classes and relations
validate_project_setup(new_p.id, request.user.id, fix=True)
# If the source project is a tracing project, make the clone as well one.
# A local import is used here to avoid a high potential for circular imports.
from catmaid.control.tracing import check_tracing_setup, setup_tracing
if check_tracing_setup(project_id):
setup_tracing(new_p.id)
return JsonResponse({
'new_project_id': new_p.id,
'n_copied_stack_links': len(ps_links),
})
def setUp(self):
"""Create a project and a suer with browse/annotate permissions on
it. Both are referenced when creating
"""
cache.clear()
self.client = Client()
self.user = User.objects.create(username="******")
self.user.set_password("test")
self.user.save()
self.admin = User.objects.create(username="******", is_superuser=True)
self.admin.set_password("admin")
self.admin.save()
self.project = Project.objects.create(title="Testproject")
assign_perm('can_browse', self.user, self.project)
assign_perm('can_annotate', self.user, self.project)
# Set project up for tracing
tracing.setup_tracing(self.project.id, self.admin)
self.authenticate()
def fork(request:HttpRequest, project_id) -> JsonResponse:
"""Attempt to create a new project based on the passed in project ID.
---
parameters:
- name: name
description: Name of new project
required: true
type: string
- name: copy_volumes
description: Whether volumes will be copied to the new project
required: false
type: boolean
defaultValue: false
"""
name = request.POST.get('name')
if not name:
raise ValueError('Need new project name')
copy_volumes = get_request_bool(request.POST, 'copy_volumes', False)
current_p = get_object_or_404(Project, pk=project_id)
new_p = get_object_or_404(Project, pk=project_id)
new_p.id = None
new_p.title = name
new_p.save()
# Copy all project-stack links
ps_links = ProjectStack.objects.filter(project=current_p)
for ps in ps_links:
ps.id = None
ps.project = new_p
ps.save()
# Assign read/write/import permissions for new fork
assign_perm('can_browse', request.user, new_p)
assign_perm('can_annotate', request.user, new_p)
assign_perm('can_import', request.user, new_p)
assign_perm('can_fork', request.user, new_p)
assign_perm('can_administer', request.user, new_p)
assign_perm('delete_project', request.user, new_p)
# Creat basic classes and relations
validate_project_setup(new_p.id, request.user.id, fix=True)
# If the source project is a tracing project, make the clone as well one.
# A local import is used here to avoid a high potential for circular imports.
from catmaid.control.tracing import check_tracing_setup, setup_tracing
if check_tracing_setup(project_id):
setup_tracing(new_p.id)
if copy_volumes:
cursor = connection.cursor()
cursor.execute("""
INSERT INTO catmaid_volume (user_id, project_id, creation_time,
edition_time, editor_id, name, comment, geometry, area,
volume, watertight, meta_computed)
SELECT user_id, %(new_project_id)s, creation_time, edition_time,
editor_id, name, comment, geometry, area, volume, watertight,
meta_computed
FROM catmaid_volume
WHERE project_id = %(project_id)s;
""", {
'project_id': project_id,
'new_project_id': new_p.id
})
return JsonResponse({
'new_project_id': new_p.id,
'n_copied_stack_links': len(ps_links),
})
def handle(self, *args, **options):
user = User.objects.get(pk=options['user_id'])
# Set up tracing for the requested project
setup_tracing(options['project_id'], user)
def handle(self, *args, **options):
user = User.objects.get(pk=options['user_id'])
# Set up tracing for the requested project
setup_tracing(options['project_id'], user)
def fork(request: HttpRequest, project_id) -> JsonResponse:
"""Attempt to create a new project based on the passed in project ID.
---
parameters:
- name: name
description: Name of new project
required: true
type: string
- name: description
description: Description of new project
required: false
type: string
- name: copy_volumes
description: Whether volumes will be copied to the new project
required: false
type: boolean
defaultValue: false
- name: project_token
description: Whether or not a new project token should be generated
required: false
type: boolean
defaultValue: false
- name: add_to_favorites
description: Whether or not the new project is marked as a favorite
required: false
type: boolean
defaultValue: true
"""
name = request.POST.get('name')
if not name:
raise ValueError('Need new project name')
description = request.POST.get('description')
copy_volumes = get_request_bool(request.POST, 'copy_volumes', False)
create_project_token = get_request_bool(request.POST, 'project_token',
False)
project_token_approval_needed = get_request_bool(
request.POST, 'project_token_approval_needed', False)
project_token_default_perms = get_request_list(
request.POST, 'project_token_default_permissions', [])
add_to_favorites = get_request_bool(request.POST, 'add_to_favorites', True)
current_p = get_object_or_404(Project, pk=project_id)
new_p = get_object_or_404(Project, pk=project_id)
new_p.id = None
new_p.title = name
new_p.comment = description
new_p.save()
# Copy all project-stack links
ps_links = ProjectStack.objects.filter(project=current_p)
for ps in ps_links:
ps.id = None
ps.project = new_p
ps.save()
# Assign read/write/import permissions for new fork
assign_perm('can_browse', request.user, new_p)
assign_perm('can_annotate', request.user, new_p)
assign_perm('can_import', request.user, new_p)
assign_perm('can_fork', request.user, new_p)
assign_perm('can_administer', request.user, new_p)
assign_perm('delete_project', request.user, new_p)
# Creat basic classes and relations
validate_project_setup(new_p.id, request.user.id, fix=True)
# If the source project is a tracing project, make the clone as well one.
# A local import is used here to avoid a high potential for circular imports.
from catmaid.control.tracing import check_tracing_setup, setup_tracing
if check_tracing_setup(project_id):
setup_tracing(new_p.id)
if copy_volumes:
cursor = connection.cursor()
cursor.execute(
"""
INSERT INTO catmaid_volume (user_id, project_id, creation_time,
edition_time, editor_id, name, comment, geometry, area,
volume, watertight, meta_computed)
SELECT user_id, %(new_project_id)s, creation_time, edition_time,
editor_id, name, comment, geometry, area, volume, watertight,
meta_computed
FROM catmaid_volume
WHERE project_id = %(project_id)s;
""", {
'project_id': project_id,
'new_project_id': new_p.id
})
project_token_str = None
if create_project_token:
allowed_permissions = set(
get_perms_for_model(Project).values_list('codename', flat=True))
unknown_permissions = set(
project_token_default_perms) - allowed_permissions
if unknown_permissions:
raise ValueError(
f'Unknown permissions: {", ".join(unknown_permissions)}')
project_token = ProjectToken.objects.create(
**{
'user_id': request.user.id,
'project_id': new_p.id,
'name': "",
'needs_approval': project_token_approval_needed,
'default_permissions': project_token_default_perms,
})
project_token.name = f'Project token #{project_token.id}'
project_token.save()
project_token_str = project_token.token
if add_to_favorites:
FavoriteProject.objects.create(**{
'project_id': new_p.id,
'user_id': request.user.id,
})
return JsonResponse({
'new_project_id': new_p.id,
'n_copied_stack_links': len(ps_links),
'project_token': project_token_str,
})
