def test_and_write_report(DatFileName,ProbeFileName,IntraChannel,ResultDir,ReportFile,DontSort=False):
print("Processing dat file %s with probe file %s"%(DatFileName,ProbeFileName))
if not DontSort: classify_from_raw_data("batch",join(DataDir,DatFileName),ProbeFileName = ProbeFileName,output_dir=ResultDir)
IntraDir = join(ResultDir,intra_basename(DatFileName))
if os.path.exists(IntraDir):
os.system("rm -rf %s"%IntraDir)
extract_intra_spikes(join(DataDir,DatFileName),IntraChannel = IntraChannel,output_dir=ResultDir)
caton.utils_misc.OUTPUT_FILE = ReportFile
print_report_from_dirs(join(ResultDir,processed_basename(DatFileName,ProbeFileName,"batch")),IntraDir)
oprint("")
caton.utils_misc.OUTPUT_FILE = None
usage = """%prog your_dat_file.dat intra_channel
%prog -h displays help"""
parser = OptionParser(usage)
parser.add_option(caton.myopts.output)
parser.add_option(
"-e",
action="store",
dest="ExtraStr",
help=
"""Optionally specify a number of extracellularly recorded channels to be included in spk file in the form
-e "0 1 2 3".""")
(opts, args) = parser.parse_args()
if len(args) != 2:
parser.error("Wrong number of arguments")
DatFileName, IntraChannel = args
if not os.path.exists(DatFileName):
parser.error("File not found: %s" % DatFileName)
ExtraChannels = [int(char) for char in opts.ExtraStr.split()
] if opts.ExtraStr is not None else None
if __name__ == '__main__':
extract_intra_spikes(DatFileName,
IntraChannel,
output_dir=opts.output,
ExtraChannels=ExtraChannels)
from optparse import OptionParser
from caton.core import extract_intra_spikes
import caton.myopts
usage = """%prog your_dat_file.dat intra_channel
%prog -h displays help"""
parser = OptionParser(usage)
parser.add_option(caton.myopts.output)
parser.add_option("-e",action="store",dest="ExtraStr",
help="""Optionally specify a number of extracellularly recorded channels to be included in spk file in the form
-e "0 1 2 3".""")
(opts,args) = parser.parse_args()
if len(args) != 2:
parser.error("Wrong number of arguments")
DatFileName,IntraChannel = args
if not os.path.exists(DatFileName):
parser.error("File not found: %s"%DatFileName)
ExtraChannels = [int(char) for char in opts.ExtraStr.split()] if opts.ExtraStr is not None else None
if __name__ == '__main__':
extract_intra_spikes(DatFileName,IntraChannel,output_dir=opts.output,ExtraChannels = ExtraChannels)
