def make_workspaces(self, input_images):
pipeline = cpp.Pipeline()
def callback(caller, event):
self.assertFalse(isinstance(event, cpp.RunExceptionEvent))
pipeline.add_listener(callback)
module = R.RunImageJ()
module.module_num = 1
module.wants_to_set_current_image.value = False
module.current_input_image_name.value = INPUT_IMAGE_NAME
module.current_output_image_name.value = OUTPUT_IMAGE_NAME
pipeline.add_module(module)
image_set_list = cpi.ImageSetList()
workspaces = []
for i, input_image in enumerate(input_images):
image_set = image_set_list.get_image_set(i)
image_set.add(INPUT_IMAGE_NAME, cpi.Image(input_image))
workspace = cpw.Workspace(pipeline, module, image_set,
cpo.ObjectSet(), cpm.Measurements(),
image_set_list)
workspaces.append(workspace)
module.prepare_group(workspaces[0], {},
list(range(1,
len(input_images) + 1)))
return workspaces, module
def make_workspace(self, input_image=None, wants_output_image=False):
pipeline = cpp.Pipeline()
def callback(caller, event):
self.assertFalse(isinstance(event, cpp.RunExceptionEvent))
pipeline.add_listener(callback)
module = R.RunImageJ()
module.module_num = 1
pipeline.add_module(module)
image_set_list = cpi.ImageSetList()
image_set = image_set_list.get_image_set(0)
if input_image is None:
module.wants_to_set_current_image.value = False
else:
module.wants_to_set_current_image.value = True
module.current_input_image_name.value = INPUT_IMAGE_NAME
image_set.add(INPUT_IMAGE_NAME, cpi.Image(input_image))
module.wants_to_get_current_image.value = wants_output_image
if wants_output_image:
module.current_output_image_name.value = OUTPUT_IMAGE_NAME
workspace = cpw.Workspace(pipeline, module, image_set, cpo.ObjectSet(),
cpm.Measurements(), image_set_list)
module.prepare_group(workspace, {}, [1])
return workspace, module
