def main(args, outs):
filtered_matrices = filter_barcodes(args, outs)
matrix_attrs = cr_matrix.make_matrix_attrs_count(
args.sample_id, args.gem_groups,
cr_chem.get_description(args.chemistry_def))
filtered_matrices.save_h5(outs.filtered_matrices_h5,
extra_attrs=matrix_attrs)
filtered_matrices.save_mex(outs.filtered_matrices_mex)
def join_matrices(args, outs, chunk_defs, chunk_outs):
chunk_h5s = [chunk_out.matrices_h5 for chunk_out in chunk_outs]
matrices = cr_matrix.merge_matrices(chunk_h5s)
matrix_attrs = cr_matrix.make_matrix_attrs_count(
args.sample_id, args.gem_groups,
cr_chem.get_description(args.chemistry_def))
matrices.save_h5(outs.matrices_h5, extra_attrs=matrix_attrs)
matrices.save_mex(outs.matrices_mex)
def join_matrices(args, outs, chunk_defs, chunk_outs):
chunk_h5s = [chunk_out.matrices_h5 for chunk_out in chunk_outs]
matrix = cr_matrix.merge_matrices(chunk_h5s)
matrix_attrs = cr_matrix.make_matrix_attrs_count(
args.sample_id, args.gem_groups,
cr_chem.get_description(args.chemistry_def))
matrix.save_h5_file(outs.matrices_h5, extra_attrs=matrix_attrs)
rna_matrix.save_mex(matrix, outs.matrices_mex,
martian.get_pipelines_version())
def join(args, outs, _chunk_defs, _chunk_outs):
filtered_matrix = filter_barcodes(args, outs)
matrix_attrs = cr_matrix.make_matrix_attrs_count(
args.sample_id, args.gem_groups,
cr_chem.get_description(args.chemistry_def))
filtered_matrix.save_h5_file(outs.filtered_matrices_h5,
extra_attrs=matrix_attrs)
rna_matrix.save_mex(filtered_matrix, outs.filtered_matrices_mex,
martian.get_pipelines_version())