def write_script(d, stage, weightstring=None, logfile=True, include_instruction_pipe=False):
if stage not in set(['nbest','forest']):
raise Exception
if logfile:
logdir = os.path.join(d.outdir,'logs')
cfg.execute(d,'mkdir -p %s' % logdir)
ruledir = d.config['rules']
decodefile = os.path.join(d.tmpdir,'decoder')
decodescript = open(decodefile,'w')
infos = []
print >> decodescript, '#!/usr/bin/env bash'
print >> decodescript, 'HOST=`hostname`'
print >> decodescript, 'TMPDIR=%s' % os.getenv('TMPDIR','/tmp')
if logfile:
print >> decodescript, 'LOG=%s/decode-log.$HOST-$$.log' % logdir
print >> decodescript, 'cd %s' % d.tmpdir
print >> decodescript, 'set -e'
print >> decodescript, 'set -o pipefail'
if include_instruction_pipe:
print >> decodescript, os.path.join(d.scriptdir,'decoder-instructions'), ruledir , '-c %s | \\' % d.config_files
print >> decodescript, d.config['decoder']['exec'], "%s/xsearchdb" % ruledir , '--multi-thread \\'
if 'weights' in d.config:
print >> decodescript, ' -w %s \\' % os.path.abspath(d.config['weights'])
if 'nbests' not in d.config['decoder']['options']:
d.config['decoder']['options']['nbests'] = 10
for k,v in d.config['decoder']['options'].iteritems():
print >> decodescript,' --%s %s \\' % (k,v)
for step in cfg.steps(d):
if step.stage == 'decode':
print >> decodescript, ' %s \\' % step.options
if step.info != '':
infos.append(step.info)
if len(infos) > 0:
print >> decodescript, ' -u %s \\' % ','.join(infos)
if stage == 'nbest':
print >> decodescript, ' --output-format nbest --newline-after-pop true --append-rules \\'
elif stage == 'forest':
print >> decodescript, ' --output-format forest --newline-after-pop true \\'
if logfile:
print >> decodescript, ' 2> $LOG \\'
#print >> decodescript, ' 2> >(gzip > $LOG.gz) \\'
if stage == 'forest':
print >> decodescript, "| %s/join_forests | sed -u -e 's/@UNKNOWN@//g'" % d.scriptdir
else:
print >> decodescript, "| %s/join_nbests %s" % (d.scriptdir,d.config['decoder']['options']['nbests'])
print >> decodescript, '\n\n'
if logfile:
print >> decodescript, 'gzip $LOG \n\n'
decodescript.close()
os.chmod(decodefile, stat.S_IRWXU | os.stat(decodefile)[stat.ST_MODE])
return decodefile
def write_script(d):
steps = cfg.steps(d)
repairs = ['cat']
for step in steps:
if step.stage == 'post-process-extras':
repairs.append(step.executable())
postprocmap = os.path.join(d.tmpdir, 'postprocmap')
ppm = open(postprocmap, 'w')
print >> ppm, '#!/usr/bin/env bash'
print >> ppm, 'set -e'
print >> ppm, 'set -o pipefail'
print >> ppm, 'cd', os.getcwd()
print >> ppm, '|'.join(repairs)
ppm.close()
os.chmod(postprocmap, stat.S_IRWXU | stat.S_IRWXG | stat.S_IXUSR)
return postprocmap
def write_script(d):
steps = cfg.steps(d)
repairs = ['cat']
for step in steps:
if step.stage == 'post-process-extras':
repairs.append(step.executable())
postprocmap = os.path.join(d.tmpdir,'postprocmap')
ppm = open(postprocmap,'w')
print >> ppm, '#!/usr/bin/env bash'
print >> ppm, 'set -e'
print >> ppm, 'set -o pipefail'
print >> ppm, 'cd', os.getcwd()
print >> ppm, '|'.join(repairs)
ppm.close()
os.chmod(postprocmap,stat.S_IRWXU | stat.S_IRWXG | stat.S_IXUSR)
return postprocmap
, default=argparse.SUPPRESS
, action=store_training
)
if __name__ == '__main__':
os.putenv('LANG','C')
os.putenv('LC_ALL','C')
d = cfg.parse_args(parser,write='$outdir/rules.config',modeldir=True)
cfgf = open(os.path.join(d.outdir,'rules.config'),'a')
print >> cfgf, '\nrules:', d.outdir
cfgf.close()
dir = os.path.abspath(os.path.dirname(__file__))
finp = os.path.join(dir,'ghkm','filterbadinput')
names = []
triplefiles = [d.config['target'], d.config['source'], d.config['align']]
steps = cfg.steps(d)
hp = d.hadoop
training = os.path.join(d.tmpdir,'training')
trainingtmp = os.path.join(d.tmpdir,'training.tmp')
trainingnew = trainingtmp + '.new'
pastefiles = [trainingnew]
for step in steps:
if step.stage == 'ghkm':
try:
if 'file' in step.__dict__:
pastefiles.append(step.file)
names.append(step.name)
except:
print >> sys.stderr, 'no file in', step
