def _plot_default(self):
self.data = self._data_default()
plot = Plot(self.data)
for ii, s_name in enumerate(self._samples):
color = COLORS[ii % len(self._samples)]
plot.plot(('bins',s_name), name=s_name,
type='filled_line',
edge_color=color,
face_color=color,
alpha=0.5,
bgcolor='white',
render_style='hold') # render_style determines whether interpolate
plot.index = plot._get_or_create_datasource('bins') #set index name manually so range selection works
plot.index_scale = 'log'
plot.title = 'Fermi Plot'
plot.padding = 50
plot.legend.visible = True
plot.tools.append(PanTool(plot))
plot.active_tool = RangeSelection(plot)
plot.overlays.append(RangeSelectionOverlay(component=plot))
zoom = ZoomTool(component=plot, tool_mode='box', always_on=False)
plot.overlays.append(zoom)
return plot
def _plot_default(self):
self.data = self._data_default()
plot = Plot(self.data)
for ii, s_name in enumerate(self._samples):
color = COLORS[ii % len(self._samples)]
plot.plot(
("bins", s_name),
name=s_name,
type="filled_line",
edge_color=color,
face_color=color,
alpha=0.5,
bgcolor="white",
render_style="hold",
) # render_style determines whether interpolate
plot.index = plot._get_or_create_datasource("bins") # set index name manually so range selection works
plot.index_scale = "log"
plot.title = "Fermi Plot"
plot.padding = 50
plot.legend.visible = True
plot.tools.append(PanTool(plot))
plot.active_tool = RangeSelection(plot)
plot.overlays.append(RangeSelectionOverlay(component=plot))
zoom = ZoomTool(component=plot, tool_mode="box", always_on=False)
plot.overlays.append(zoom)
return plot
def _stackedhist_default(self):
plot = Plot(self.stackedhist_data, padding=(25, 0, 5, 20))
plot_selected = plot.plot(('index', 'selected'), type='bar', bar_width=1, fill_color='red', line_color='red')
plot_parkinson = plot.plot(('index', 'positives'), type='bar', bar_width=0.5, fill_color='yellow', line_color='yellow')
plot_control = plot.plot(('index', 'negatives'), name="select", type='bar', bar_width=0.5, fill_color='blue', line_color='blue')
# set the plot's value low range to 0, otherwise it will pad too much
plot.value_range = DataRange1D(low_settings=0)
legend = Legend(component=plot, padding=5, align='ur',
plots={'Control': plot_control, 'Parkinson': plot_parkinson})
plot.overlays.append(legend)
#return plot
zoomplot = Plot(self.stackedhist_data, padding=(25, 0, 5, 20))
zoomplot_selected = zoomplot.plot(('index', 'selected'), type='bar', bar_width=1, fill_color='red', line_color='red')
zoomplot_parkinson = zoomplot.plot(('index', 'positives'), type='bar', bar_width=0.5, fill_color='yellow', line_color='yellow')
zoomplot_control = zoomplot.plot(('index', 'negatives'), type='bar', bar_width=0.5, fill_color='blue', line_color='blue')
zoomplot.value_range = DataRange1D(low_settings=0)
zoomplot.index_axis.title = "Class count / patch"
outer_container = VPlotContainer(padding=20,
fill_padding=True,
spacing=0,
stack_order='top_to_bottom',
bgcolor='lightgray',
use_backbuffer=True)
plot.index = plot_control[0].index
outer_container.add(plot)
outer_container.add(zoomplot)
plot.controller = RangeSelection(plot)
zoom_overlay = ZoomOverlay(source=plot, destination=zoomplot)
outer_container.overlays.append(zoom_overlay)
return outer_container
