def get_datapreview_recombinant(dataset_type, res_id):
from ckanext.recombinant.plugins import get_table
t = get_table(dataset_type)
default_preview_args = {}
if 'default_preview_sort' in t:
default_preview_args['sort'] = t['default_preview_sort']
lc = ckanapi.LocalCKAN(username=c.user)
results = lc.action.datastore_search(
resource_id=res_id, limit=0,
**default_preview_args)
lang = h.lang()
field_label = {}
for f in t['fields']:
label = f['label'].split(' / ')
label = label[0] if lang == 'en' else label[-1]
field_label[f['datastore_id']] = label
fields = [{
'type': f['type'],
'id': f['id'],
'label': field_label.get(f['id'], f['id'])}
for f in results['fields']]
return h.snippet('package/wet_datatable.html',
resource_id=res_id,
ds_fields=fields)
def csv_data_batch(csv_path, target_dataset):
"""
Generator of dataset records from csv file
:param csv_path: file to parse
:ptype csv_file: str
:param target_dataset: name of target dataset (e.g., 'ati', 'pd', etc.)
:ptype target_dataset: str
:return a batch of records for at most one organization
:rtype: dict mapping at most one org-id to
at most BATCH_SIZE (dict) records
"""
dataset_types = get_dataset_types(target_dataset)
# Use JSON schema to discover the dataset type to which the file corresponds
schema_tables = dict((
t,
dict((f['label'], f['datastore_id'])
for f in get_table(t)['fields']))
for t in dataset_types)
records = {}
schema_cols = None
cols = None
csv_path = os.path.abspath(os.path.expandvars(os.path.expanduser(csv_path)))
if os.path.islink(csv_path):
csv_path = os.readlink(csv_path)
with open(csv_path) as f:
csv_in = DictReader(f)
cols = csv_in.unicode_fieldnames
for k, v in schema_tables.iteritems():
if (len(set(v.keys()).intersection(set(cols))) == len(v.keys()) and
len(cols) == len(v.keys()) + 2):
# columns represent all schema data fields + 'Org id', 'Org'
schema_cols = [v[col] if col in v else col for col in cols]
break
assert schema_cols > 0, '{0:s} does not match any dataset type {1}'.format(
csv_path, dataset_types)
with open(csv_path) as f:
# use new dict, each col named for its corresponding JSON datastore_id
csv_in = DictReader(f, fieldnames=schema_cols)
csv_in.next() # skip header row: no new info
for row_dict in csv_in:
org_id = row_dict.pop('Org id')
org = row_dict.pop('Org')
if org_id not in records:
if len(records.keys()):
org_id_done = records.keys()[0]
yield {org_id_done: records.pop(org_id_done)}
records[org_id] = []
row_dict = dict((k, safe_for_solr(v)) for k, v in row_dict.items())
records[org_id].append(row_dict)
if len(records[org_id]) >= BATCH_SIZE:
yield {org_id: records.pop(org_id)}
yield records
def _build_templates(self):
"""
Implement build-templates command
"""
lc = LocalCKAN()
output_files = {}
next_row = {}
output_counter = {}
output_path = self.args[2:][-1]
dataset_types = get_dataset_types(self.command_name)
table = get_table(dataset_types[0])
def close_write_file(org_id):
book = output_files[org_id]
if not book:
return
book.save(os.path.join(output_path,
org_id + '-' + str(output_counter[org_id]) + '.xls'))
output_files[org_id] = None
def out_file(org_id):
if org_id in output_files:
next_row[org_id] += 1
# need to start a new file?
if next_row[org_id] > SPLIT_XLS_ROWS:
close_write_file(org_id)
else:
return output_files[org_id], next_row[org_id]
try:
org = lc.action.organization_show(
id=org_id, include_data_batch=False)
except NotFound:
logging.error('org id', org_id, 'not found')
output_files[org_id] = None
next_row[org_id] = 0
return None, None
book = xls_template(dataset_types[0], org)
output_files[org_id] = book
output_counter[org_id] = output_counter.get(org_id, 0) + 1
next_row[org_id] = len(book.get_sheet(0).get_rows())
return book, next_row[org_id]
def add_row(book, row, d):
sheet = book.get_sheet(0)
for i, f in enumerate(table['fields']):
sheet.write(row, i, d[f['datastore_id']])
for f in self.args[1:-1]:
for d in DictReader(open(f, 'rb')):
book, row = out_file(d['organization'])
if not book:
continue
add_row(book, row, d)
for org_id in output_files:
close_write_file(org_id)
def _build_templates(self):
lc = LocalCKAN()
output_files = {}
next_row = {}
output_counter = {}
output_path = self.args[2:][-1]
table = get_table(DATASET_TYPE)
def close_write_file(org_id):
book = output_files[org_id]
if not book:
return
book.save(os.path.join(output_path,
org_id + '-' + str(output_counter[org_id]) + '.xls'))
output_files[org_id] = None
def out_file(org_id):
if org_id in output_files:
next_row[org_id] += 1
# need to start a new file?
if next_row[org_id] > SPLIT_XLS_ROWS:
close_write_file(org_id)
else:
return output_files[org_id], next_row[org_id]
try:
org = lc.action.organization_show(id=org_id, include_datasets=False)
except NotFound:
print 'org id', org_id, 'not found'
output_files[org_id] = None
next_row[org_id] = 0
return None, None
book = xls_template(DATASET_TYPE, org)
output_files[org_id] = book
output_counter[org_id] = output_counter.get(org_id, 0) + 1
next_row[org_id] = len(book.get_sheet(0).get_rows())
return book, next_row[org_id]
def add_row(book, row, d):
sheet = book.get_sheet(0)
for i, f in enumerate(table['fields']):
sheet.write(row, i, d[f['datastore_id']])
for f in self.args[1:-1]:
for d in DictReader(open(f, 'rb')):
book, row = out_file(d['organization'])
if not book:
continue
add_row(book, row, d)
for org_id in output_files:
close_write_file(org_id)
def _check_table_columns(self, res_id, dataset_type):
"""
return a list of columns in the res_id if they don't match the
columns that would be created for this type.
"""
lc = ckanapi.LocalCKAN()
t = get_table(dataset_type)
try:
result = lc.action.datastore_search(resource_id=res_id, rows=0)
except ckanapi.NotFound:
return "table missing!"
fields = result['fields'][1:] # remove '_id'
if len(fields) != len(t['fields']):
return "wrong number of columns!"
for df, tf in zip(fields, t['fields']):
if df['id'] != tf['datastore_id']:
return "columns don't match: %s" % ' '.join(
f['id'] for f in fields)
def _update_records(records, org_detail, conn, recombinant_type):
"""
Update records on solr core
:param records: record dicts
:ptype records: sequence of record dicts
:param org_detail: org structure as returned via local CKAN
:ptype org_detail: dict with local CKAN org structure
:param conn: solr connection
:ptype conn: obj
:param recombinant_type: type being
"""
table = get_table(recombinant_type)
pk = table.get('datastore_primary_key', [])
if not isinstance(pk, list):
pk = [pk]
org = org_detail['name']
orghash = hashlib.md5(org).hexdigest()
def unique_id(r):
s = orghash
if not pk:
s = hashlib.md5(s + recombinant_type + "-%d" % r['_id']).hexdigest()
for k in pk:
s = hashlib.md5(s + r[k].encode('utf-8')).hexdigest()
return s
out = []
for r in records:
unique = unique_id(r)
shortform = None
shortform_fr = None
for e in org_detail['extras']:
if e['key'] == 'shortform':
shortform = e['value']
elif e['key'] == 'shortform_fr':
shortform_fr = e['value']
solrrec = {
'id': unique,
'org_name_code': org_detail['name'],
'org_name_en': org_detail['title'].split(' | ', 1)[0],
'org_name_fr': org_detail['title'].split(' | ', 1)[-1],
}
for f in table['fields']:
key = f['datastore_id']
value = r[key]
facet_range = f.get('solr_float_range_facet')
if facet_range:
try:
float_value = float(value)
except ValueError:
pass
else:
for i, fac in enumerate(facet_range):
if 'less_than' not in fac or float_value < fac['less_than']:
solrrec[key + '_range'] = str(i)
solrrec[key + '_range_en'] = fac['label'].split(' | ')[0]
solrrec[key + '_range_fr'] = fac['label'].split(' | ')[-1]
break
if f.get('datastore_type') == 'date':
try:
value = date2zulu(value)
# CM: If this only applies to PD types this should be accurate
# CM: This should only apply if valid (as per date2zulu) else NULL
if f.get('extract_date_year'):
solrrec['date_year'] = value.split('-', 1)[0]
if f.get('extract_date_month'):
solrrec['date_month'] = value.split('-')[1]
except ValueError:
pass
solrrec[key] = value
choices = f.get('choices')
if not choices:
if 'choices_source' not in f:
continue
choices = f['choices'] = extract_choices(f['choices_source'])
if key.endswith('_code'):
key = key[:-5]
solrrec[key + '_en'] = choices.get(value, '').split(' | ')[0]
solrrec[key + '_fr'] = choices.get(value, '').split(' | ')[-1]
out.append(solrrec)
conn.add_many(out, _commit=True)
def upload(self, id):
package_type = self._get_package_type(id)
t = get_table(package_type)
expected_sheet_name = t['xls_sheet_name']
try:
lc = ckanapi.LocalCKAN(username=c.user)
package = lc.action.package_show(id=id)
owner_org = package['organization']['name']
if request.POST['xls_update'] == u'':
msg = _('You must provide a valid file')
raise ValidationError({'xls_update': [msg]})
upload_data = read_xls(request.POST['xls_update'].file)
sheet_name, org_name = None, None
try:
sheet_name, org_name = next(upload_data)
except:
# XXX bare except because this can fail in all sorts of ways
if asbool(config.get('debug', False)):
# on debug we want the real error
raise
raise ValidationError({'xls_update':
[_("The server encountered a problem processing the file "
"uploaded. Please try copying your data into the latest "
"version of the template and uploading again. If this "
"problem continues, send your Excel file to "
"[email protected] so we may investigate.")]})
if expected_sheet_name != sheet_name:
raise ValidationError({'xls_update':
[_('Invalid file for this data type. ' +
'Sheet must be labeled "{0}", ' +
'but you supplied a sheet labeled "{1}"').format(
expected_sheet_name, sheet_name)]})
# is this the right sheet for this organization?
if org_name != owner_org:
msg = _(
'Invalid sheet for this organization. ' +
'Sheet must be labeled for {0}, ' +
'but you supplied a sheet for {1}').format(
owner_org, org_name)
raise ValidationError({'xls_update': [msg]})
resource_id = package['resources'][0]['id']
records = get_records(upload_data, t['fields'])
method = 'upsert' if t.get('datastore_primary_key') else 'insert'
try:
lc.action.datastore_upsert(
method=method,
resource_id=resource_id,
records=records)
except NotAuthorized, na:
msg = _(
'You do not have permission to upload to {0}').format(
owner_org)
raise ValidationError({'xls_update': [msg]})
h.flash_success(_(
"Your file was successfully uploaded into the central system."
))
redirect(h.url_for(controller='package', action='read', id=id))