def main():
username = password = None
parameters = {}
begin = 0
rawargs = sys.argv[1:]
for i,o in enumerate(rawargs):
if o == '-u':
username = rawargs[i+1]
begin = i+2
elif o == '-p':
password = rawargs[i+1]
begin = i+2
elif o == '-h':
usage()
sys.exit(0)
elif o == '-v':
print "CLAM Client version " + str(VERSION)
sys.exit(0)
elif o[0] == '-' and len(o) > 1 and o[1] != '-':
usage()
print "ERROR: Unknown option: ", o
sys.exit(2)
elif o[:2] == '--':
if len(rawargs) > i + 1:
parameters[o[2:]] = rawargs[i+1]
begin = i+2
else:
parameters[o[2:]] = True
begin = i+1
if len(rawargs) > begin:
url = rawargs[begin]
else:
usage()
sys.exit(2)
print "ERROR: URL expected"
if url[:4] != 'http':
print "ERROR: URL expected"
usage()
sys.exit(2)
client = CLAMClient(url, username,password)
if len(rawargs) > begin + 1:
command = rawargs[begin+1]
args = rawargs[begin+2:]
else:
command = 'info'
args = []
if command == 'info' and len(args) > 1:
command = 'get'
try:
data = None
if command in ['info','index','projects','inputtemplates','parameters','profiles']:
data = client.index()
elif command in ['get','input','output','status','inputtemplate']:
if len(args) != 1:
print >>sys.stderr, "Expected project ID"
sys.exit(2)
data = client.get(args[0])
elif command == 'create':
if len(args) != 1:
print >>sys.stderr, "Expected project ID"
sys.exit(2)
client.create(args[0])
elif command == 'delete' or command == 'abort':
if len(args) != 1:
print >>sys.stderr, "Expected project ID"
sys.exit(2)
client.delete(args[0])
#elif command == 'reset':
# if len(args) != 1:
# print >>sys.stderr, "Expected project ID"
# sys.exit(2)
# client.reset(args[0])
elif command == 'xml':
if len(args) ==1:
data = client.get(args[0])
else:
data = client.index()
elif command == 'upload':
if len(args) < 3:
print >>sys.stderr, "Expected: project inputtemplate file "
sys.exit(2)
project = args[0]
data = client.get(project)
try:
inputtemplate = data.inputtemplate(args[1])
except:
print >>sys.stderr, "No such input template: " + args[1]
sys.exit(2)
filepath = args[2]
if not os.path.isfile(filepath):
print >>sys.stderr, "File does not exist: " + filepath
sys.exit(2)
client.upload(project,inputtemplate, filepath, **parameters)
elif command == 'download':
if len(args) < 2:
print >>sys.stderr, "Expected: project file "
sys.exit(2)
project = args[0]
filepath = args[1]
if len(args) == 3:
targetfile = args[2]
else:
targetfile = os.path.basename(filepath)
client.download(project, filepath, targetfile)
else:
print >>sys.stderr,"Unknown command: " + command
sys.exit(1)
if data:
if command == 'xml':
print data.xml
if command in ['info','get']:
print "General Information"
print "\tSystem ID: " + data.system_id
print "\tSystem Name: " + data.system_name
print "\tSystem URL: " + data.baseurl
if username:
print "\tUser: "******"\tProject: " + data.project
if command in ['info','projects','index']:
print "Projects"
for project in data.projects:
print "\t" + project
if command in ['get','status']:
print "Status Information"
print "\tStatus: " + str(data.status) #TODO: nicer messages
print "\tStatus Message: " + data.statusmessage
print "\tCompletion: " + str(data.completion) + "%"
if command in ['info','profiles']:
print "Profiles:" #TODO: Implement
for i, profile in enumerate(data.profiles):
print "\tProfile " + str(i+1)
print "\t Input"
for template in profile.input:
print "\t\t" + template.id + " - " + template.label
print "\t Output"
for template in profile.output:
if isinstance(template, ParameterCondition):
for t in template.allpossibilities():
print "\t\t(CONDITIONAL!) " + t.id + " - " + t.label
else:
print "\t\t" + template.id + " - " + template.label
if command == 'inputtemplates':
print "Input templates:"
for template in data.input:
print "\t\t" + template.id + " - " + template.label
if command == 'inputtemplate':
try:
inputtemplate = data.inputtemplate(args[0])
except:
print >>sys.stderr, "No such inputtemplate"
sys.exit(1)
print "Inputtemplate parameters:"
for parameter in inputtemplate.parameters:
print "\t\t" + str(parameter) #VERIFY: unicode support?
print "Inputtemplate converters:"
for c in inputtemplate.converters:
print "\t\t" + c.id + " - " + c.label #VERIFY: unicode support?
if command in ['info','parameters']:
print "Global Parameters:"
for group, parameters in data.parameters:
print "\t" + group
for parameter in parameters:
print "\t\t" + str(parameter) #VERIFY: unicode support?
if command in ['get','input'] and data.input:
print "Input files:"
for f in data.input:
print "\t" + f.filename + "\t" + str(f),
if f.metadata and f.metadata.inputtemplate:
print "\t" + f.metadata.inputtemplate
else:
print
if command in ['get','output'] and data.output:
print "Output files:"
for f in data.output:
print "\t" + f.filename + "\t" + str(f),
if f.metadata and f.metadata.provenance and f.metadata.provenance.outputtemplate_id:
print "\t" + f.metadata.provenance.outputtemplate_id
else:
print
except NotFound:
print >>sys.stderr, "Not Found (404)"
except PermissionDenied:
print >>sys.stderr, "Permission Denied (403)"
except ServerError:
print >>sys.stderr, "Server Error! (500)"
except AuthRequired:
print >>sys.stderr, "Authorization required (401)"
def main():
username = password = None
parameters = {}
begin = 0
rawargs = sys.argv[1:]
for i, o in enumerate(rawargs):
if o == '-u':
username = rawargs[i + 1]
begin = i + 2
elif o == '-p':
password = rawargs[i + 1]
begin = i + 2
elif o == '-h':
usage()
sys.exit(0)
elif o == '-v':
print("CLAM Client version " + str(VERSION), file=sys.stderr)
sys.exit(0)
elif o[0] == '-' and len(o) > 1 and o[1] != '-':
usage()
print("ERROR: Unknown option: ", o, file=sys.stderr)
sys.exit(2)
elif o[:2] == '--':
if len(rawargs) > i + 1:
parameters[o[2:]] = rawargs[i + 1]
begin = i + 2
else:
parameters[o[2:]] = True
begin = i + 1
if len(rawargs) > begin:
url = rawargs[begin]
else:
usage()
sys.exit(2)
print("ERROR: URL expected", file=sys.stderr)
if url[:4] != 'http':
print("ERROR: URL expected", file=sys.stderr)
usage()
sys.exit(2)
client = CLAMClient(url, username, password)
if len(rawargs) > begin + 1:
command = rawargs[begin + 1]
args = rawargs[begin + 2:]
else:
command = 'info'
args = []
if command == 'info' and len(args) > 1:
command = 'get'
try:
data = None
if command in [
'info', 'index', 'projects', 'inputtemplates', 'parameters',
'profiles'
]:
data = client.index()
elif command in ['get', 'input', 'output', 'status', 'inputtemplate']:
if len(args) != 1:
print("Expected project ID", file=sys.stderr)
sys.exit(2)
data = client.get(args[0])
elif command == 'create':
if len(args) != 1:
print("Expected project ID", file=sys.stderr)
sys.exit(2)
client.create(args[0])
elif command == 'delete' or command == 'abort':
if len(args) != 1:
print("Expected project ID", file=sys.stderr)
sys.exit(2)
client.delete(args[0])
#elif command == 'reset':
# if len(args) != 1:
# print("Expected project ID"
# sys.exit(2)
# client.reset(args[0])
elif command == 'start':
if len(args) < 1:
print("Expected project ID", file=sys.stderr)
sys.exit(2)
client.start(args[0])
elif command == 'xml':
if len(args) == 1:
data = client.get(args[0])
else:
data = client.index()
elif command == 'upload':
if len(args) < 3:
print("Expected: project inputtemplate file ", file=sys.stderr)
sys.exit(2)
project = args[0]
data = client.get(project)
try:
inputtemplate = data.inputtemplate(args[1])
except:
print("No such input template: " + args[1], file=sys.stderr)
sys.exit(2)
filepath = args[2]
if not os.path.isfile(filepath):
print("File does not exist: " + filepath, file=sys.stderr)
sys.exit(2)
client.upload(project, inputtemplate, filepath, **parameters)
elif command == 'download':
if len(args) < 2:
print("Expected: project file ", file=sys.stderr)
sys.exit(2)
project = args[0]
filepath = args[1]
if len(args) == 3:
targetfile = args[2]
else:
targetfile = os.path.basename(filepath)
client.download(project, filepath, targetfile)
else:
print("Unknown command: " + command, file=sys.stderr)
sys.exit(1)
if data:
if command == 'xml':
print(data.xml)
if command in ['info', 'get']:
print("General Information")
print("\tSystem ID: " + data.system_id)
print("\tSystem Name: " + data.system_name)
print("\tSystem URL: " + data.baseurl)
if username:
print("\tUser: "******"\tProject: " + data.project)
if command in ['info', 'projects', 'index']:
print("Projects")
for project in data.projects:
print("\t" + project)
if command in ['get', 'status']:
print("Status Information")
print("\tStatus: " + str(data.status)) #TODO: nicer messages
print("\tStatus Message: " + data.statusmessage)
print("\tCompletion: " + str(data.completion) + "%")
if command in ['info', 'profiles']:
print("Profiles:") #TODO: Implement
for i, profile in enumerate(data.profiles):
print("\tProfile " + str(i + 1))
print("\t Input")
for template in profile.input:
print("\t\t" + template.id + " - " + template.label)
print("\t Output")
for template in profile.output:
if isinstance(template, ParameterCondition):
for t in template.allpossibilities():
print("\t\t(CONDITIONAL!) " + t.id + " - " +
t.label)
else:
print("\t\t" + template.id + " - " +
template.label)
if command == 'inputtemplates':
print("Input templates:")
for template in data.input:
print("\t\t" + template.id + " - " + template.label)
if command == 'inputtemplate':
try:
inputtemplate = data.inputtemplate(args[0])
except:
print("No such inputtemplate", file=sys.stderr)
sys.exit(1)
print("Inputtemplate parameters:")
for parameter in inputtemplate.parameters:
print("\t\t" + str(parameter)) #VERIFY: unicode support?
print("Inputtemplate converters:")
for c in inputtemplate.converters:
print("\t\t" + c.id + " - " + c.label)
if command in ['info', 'parameters']:
print("Global Parameters:")
for group, parameters in data.parameters:
print("\t" + group)
for parameter in parameters:
print("\t\t" +
str(parameter)) #VERIFY: unicode support?
if command in ['get', 'input'] and data.input:
print("Input files:")
for f in data.input:
print("\t" + f.filename + "\t" + str(f), end="")
if f.metadata and f.metadata.inputtemplate:
print("\t" + f.metadata.inputtemplate)
else:
print
if command in ['get', 'output'] and data.output:
print("Output files:")
for f in data.output:
print("\t" + f.filename + "\t" + str(f), end="")
if f.metadata and f.metadata.provenance and f.metadata.provenance.outputtemplate_id:
print("\t" + f.metadata.provenance.outputtemplate_id)
else:
print
except NotFound:
print("Not Found (404)", file=sys.stderr)
except PermissionDenied:
print("Permission Denied (403)", file=sys.stderr)
except ServerError:
print("Server Error! (500)", file=sys.stderr)
except AuthRequired:
print("Authorization required (401)", file=sys.stderr)
else:
parameters[o[2:]] = True
begin = i+1
if len(rawargs) > begin:
url = rawargs[begin]
else:
usage()
sys.exit(2)
print "ERROR: URL expected"
if url[:4] != 'http':
print "ERROR: URL expected"
usage()
sys.exit(2)
client = CLAMClient(url, username,password)
if len(rawargs) > begin + 1:
command = rawargs[begin+1]
args = rawargs[begin+2:]
else:
command = 'info'
args = []
if command == 'info' and len(args) > 1:
command = 'get'
try:
data = None
if command in ['info','index','projects','inputtemplates','parameters','profiles']:
