def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'ascii'
# Load data from output
claw_data = clawdata.ClawInputData(2)
claw_data.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Set afteraxes function
surge_afteraxes = lambda cd: surgeplot.surge_afteraxes(cd, track,
plot_direction=False)
# Color limits
surface_range = 1.0
speed_range = 1.0
# speed_range = 1.e-2
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
speed_limits = [0.0,speed_range]
wind_limits = [0, 55]
pressure_limits = [966, 1013]
friction_bounds = [0.01, 0.04]
vorticity_limits = [-1.e-2, 1.e-2]
land_bounds = [-10, 50]
# ==========================================================================
# Plot specifications
# ==========================================================================
# Limits for plots
regions = {'Full Domain': {"xlimits": [claw_data.lower[0], claw_data.upper[0]],
"ylimits": [claw_data.lower[1], claw_data.upper[1]],
"shrink": 1.0,
"figsize": [6.4, 4.8]}
}
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata, gaugenos='all',
format_string='ko', add_labels=True)
for (name, region_dict) in regions.items():
# ========================================================================
# Surface Elevations
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface - %s' % name)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = region_dict['xlimits']
plotaxes.ylimits = region_dict['ylimits']
plotaxes.afteraxes = surge_afteraxes
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits,
shrink=region_dict['shrink'])
surgeplot.add_land(plotaxes, bounds=land_bounds)
plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,0,0]
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1,0,0]
# ========================================================================
# Water Speed
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Currents - %s' % name)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = region_dict['xlimits']
plotaxes.ylimits = region_dict['ylimits']
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes, bounds=speed_limits,
shrink=region_dict['shrink'])
surgeplot.add_land(plotaxes, bounds=land_bounds)
# ========================================================================
# Hurricane forcing - Entire Atlantic
# ========================================================================
# Friction field
plotfigure = plotdata.new_plotfigure(name='Friction')
plotfigure.show = False
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Full Domain']['xlimits']
plotaxes.ylimits = regions['Full Domain']['ylimits']
plotaxes.title = "Manning's N Coefficients"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes,bounds=friction_bounds)
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Full Domain']['xlimits']
plotaxes.ylimits = regions['Full Domain']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes,bounds=pressure_limits)
surgeplot.add_land(plotaxes, bounds=[-10, 500])
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Full Domain']['xlimits']
plotaxes.ylimits = regions['Full Domain']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes,bounds=wind_limits,plot_type='imshow')
surgeplot.add_land(plotaxes, bounds=[-10, 500])
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
stations = [('8518750', 'The Battery, NY'),
('8516945', 'Kings Point, NY'),
('8519483', 'Bergen Point West Reach, NY')]
#('8531680','Sandy Hook, NY'),
#('n03020','Narrows,NY')]
landfall_time = np.datetime64('2012-10-29T23:30')
begin_date = datetime.datetime(2012, 10, 28)
end_date = datetime.datetime(2012, 10, 31,)
def get_actual_water_levels(station_id):
# Fetch water levels and tide predictions for given station
date_time, water_level, tide = fetch_noaa_tide_data(station_id,
begin_date, end_date)
# Calculate times relative to landfall
seconds_rel_landfall = (date_time - landfall_time) / np.timedelta64(1, 's')
# Subtract tide predictions from measured water levels
water_level -= tide
return seconds_rel_landfall, water_level
# def get_actual_current(station_id):
# # Fetch currents for given station_name
# date_time, water_level, tide, currents = fetch_noaa_tide_data(station_id,
# begin_date, end_date)
#
# # calculate times relative to landfall_time
# secs_rel_landfall = (date_time - landfall_time) / np.timedelta64(1, 's')
# return secs_rel_landfall, currents
#
# def calc_currents(cd):
# height = cd.q[0,:]
# where_zero = np.where(height == 0)[0]
# for index in where_zero:
# height[index] = 1
# vel_magnitude = (cd.q[1,:]/height)**2 + (cd.q[2,:]/height)**2
# vel_magnitude = vel_magnitude**0.5
# return vel_magnitude
def gauge_afteraxes(cd):
station_id, station_name = stations[cd.gaugeno-1]
seconds_rel_landfall, actual_level = get_actual_water_levels(station_id)
axes = plt.gca()
#surgeplot.plot_landfall_gauge(cd.gaugesoln, axes, landfall=landfall)
axes.plot(seconds_rel_landfall, actual_level, 'g')
# Fix up plot - in particular fix time labels
axes.set_title(station_name)
axes.set_xlabel('Seconds relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([days2seconds(-2), days2seconds(1)])
axes.set_ylim([0, 4])
axes.set_xticks([ days2seconds(-2), days2seconds(-1), 0, days2seconds(1)])
#axes.set_xticklabels([r"$-3$", r"$-2$", r"$-1$", r"$0$", r"$1$"])
#axes.grid(True)
# def current_afterxes(cd):
# station_id, station_name = stations[cd.gaugeno-1]
# if len(station_id)==6:
# seconds_rel_landfall, currents = get_actual_currents(station_id)
#
# axes = plt.gca()
# #surgeplot.plot_landfall_gauge(cd.gaugesoln, axes, landfall=landfall)
# axes.plot(seconds_rel_landfall, currents, 'g')
#
# # Fix up plot - in particular fix time labels
# axes.set_title(station_name)
# axes.set_xlabel('Seconds relative to landfall')
# axes.set_ylabel('Surface (m)')
# axes.set_xlim([days2seconds(-2), days2seconds(1)])
# axes.set_xticks([ days2seconds(-2), days2seconds(-1), 0, days2seconds(1)])
# #axes.set_xticklabels([r"$-3$", r"$-2$", r"$-1$", r"$0$", r"$1$"])
# #axes.grid(True)
#
#
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# Speeds
# plotfigure = plotdata.new_plotfigure(name='Currents', figno=400, \
# type='each_gauge')
# plotfigure.show = True
# plotfigure.clf_each_gauge = True
# plotaxes = plotfigure.new_plotaxes()
#plotaxes.afteraxes = current_afterxes
# plotaxes.axescmd = 'subplot(122)'
# try:
# plotaxes.xlimits = [amrdata.t0, amrdata.tfinal]
# except:
# pass
# plotaxes.ylimits = surface_limits
#plotaxes.title = 'Momenta'
# plotaxes.afteraxes = surge.gauge_afteraxes
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = calc_currents
# plotitem.plotstyle = 'r-.'
#plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
#plotitem.plot_var = 2
#plotitem.plotstyle = 'b-'
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
""""""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# clear any old figures,axes,items data
plotdata.clearfigures()
plotdata.format = 'binary'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Set afteraxes function
def surge_afteraxes(cd):
surgeplot.surge_afteraxes(cd,
track,
plot_direction=False,
kwargs={"markersize": 4})
# Color limits
surface_limits = [physics.sea_level - 5.0, physics.sea_level + 5.0]
surface_ticks = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4, 5]
surface_labels = [str(value) for value in surface_ticks]
speed_limits = [0.0, 3.0]
speed_ticks = [0, 1, 2, 3]
speed_labels = [str(value) for value in speed_ticks]
wind_limits = [0, 66]
pressure_limits = [909, 1013]
friction_bounds = [0.01, 0.04]
def add_custom_colorbar_ticks_to_axes(axes,
item_name,
ticks,
tick_labels=None):
"""Adjust colorbar ticks and labels"""
axes.plotitem_dict[item_name].colorbar_ticks = ticks
axes.plotitem_dict[item_name].colorbar_tick_labels = tick_labels
def gulf_after_axes(cd):
# plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
surge_afteraxes(cd)
def latex_after_axes(cd):
# plt.subplot_adjust()
surge_afteraxes(cd)
def friction_after_axes(cd):
# plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
plt.title(r"Manning's $n$ Coefficient")
# surge_afteraxes(cd)
# ==========================================================================
# Plot specifications
# ==========================================================================
regions = {
"Coast": {
"xlimits": (clawdata.lower[0], clawdata.upper[0]),
"ylimits": (clawdata.lower[1], clawdata.upper[1]),
"figsize": (8, 7.5)
},
"Zhapo Station": {
"xlimits": (111.71666667, 111.91666667),
"ylimits": (21.48333333, 21.68333333),
"figsize": (6, 6)
},
"Landfall": {
"xlimits": (112.26, 112.86),
"ylimits": (21.3, 21.7),
"figsize": (6, 4)
},
"Quarry Bay": {
"xlimits": (114.11333333, 114.31333333),
"ylimits": (22.19111111, 22.39111111),
"figsize": (6, 6)
}
}
for (name, region_dict) in regions.items():
# Surface Figure
plotfigure = plotdata.new_plotfigure(name="Surface - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Surface"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks,
surface_labels)
# Speed Figure
plotfigure = plotdata.new_plotfigure(name="Currents - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Currents"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes, bounds=speed_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks,
speed_labels)
# Hurricane Forcing fields
#
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Coast']['xlimits']
plotaxes.ylimits = regions['Coast']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Coast']['xlimits']
plotaxes.ylimits = regions['Coast']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Gauge Surfaces',
figno=300,
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2.25, 0.75]
#plotaxes.xlabel = "Days from landfall"
#plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1, 4]
plotaxes.title = 'Surface'
def gauge_afteraxes(cd):
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes)
# Fix up plot - in particular fix time labels
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2.25, 0.75])
axes.set_ylim([-1, 4])
axes.set_xticks([-2.25, -1.25, -0.25, 0.75])
axes.set_xticklabels([r"$-2.25$", r"$-1.25$", r"$-0.25$", r"$0.75$"])
axes.grid(True)
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
#plotitem.plot_var = 3
#plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
def gauge_location_afteraxes(cd):
#plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.92)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos='all',
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge Locations")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Locations'
plotaxes.scaled = True
plotaxes.xlimits = [111.0, 115.0]
plotaxes.ylimits = [21.0, 22.5]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # parallel plotting
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
fig_num_counter = surgeplot.figure_counter()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir,'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir,'amr.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = surgedata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = surgedata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2008,9,13,7) - datetime.datetime(2008,1,1,0)
landfall = (landfall_dt.days - 1.0) * 24.0 * 60**2 + landfall_dt.seconds
# Color limits
surface_range = 5.0
speed_range = 3.0
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
# surface_contours = numpy.linspace(-surface_range, surface_range,11)
surface_contours = [-5,-4.5,-4,-3.5,-3,-2.5,-2,-1.5,-1,-0.5,0.5,1,1.5,2,2.5,3,3.5,4,4.5,5]
speed_limits = [0.0,speed_range]
speed_contours = numpy.linspace(0.0,speed_range,13)
wind_limits = [0,64]
# wind_limits = [-0.002,0.002]
pressure_limits = [935,1013]
friction_bounds = [0.01,0.04]
# vorticity_limits = [-1.e-2,1.e-2]
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
#-----------------------------------------
# Some global kml flags
#-----------------------------------------
plotdata.kml_name = "Ike"
plotdata.kml_starttime = [2008,9,3,15,0,0] # Time of event in UTC [None]
plotdata.kml_tz_offset = 5 # Time zone offset (in hours) of event. [None]
plotdata.kml_index_fname = "Ike" # name for .kmz and .kml files ["_GoogleEarth"]
# Set to path where KMZ files will be stored; KML file will then
# link to this path.
# plotdata.kml_publish = 'http://www.domain.edu/path/to/kmz/files'
# ========================================================================
# Entire Gulf
# ========================================================================
gulf_xlimits = [clawdata.lower[0],clawdata.upper[0]]
gulf_ylimits = [clawdata.lower[1],clawdata.upper[1]]
gulf_shrink = 1.0
# --------------------------
# Surface - entire gulf
# --------------------------
plotfigure = plotdata.new_plotfigure(name='Surface - Entire Domain',
figno=0)
plotfigure.show = True
plotfigure.use_for_kml = True
plotfigure.kml_use_for_initial_view = True
# These override axes limits set below in plotitems
plotfigure.kml_xlimits = gulf_xlimits
plotfigure.kml_ylimits = gulf_ylimits
# Resolution - needs to be set carefully for the transparent colormap
rcl = 40
plotfigure.kml_dpi = rcl*2
plotfigure.kml_figsize = [11.6, 9.6]
plotfigure.kml_tile_images = False # Tile images for faster loading. Requires GDAL [False]
plotaxes = plotfigure.new_plotaxes()
plotitem = plotaxes.new_plotitem(name='surface',plot_type='2d_pcolor')
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.googleearth_transparent
plotitem.pcolor_cmin = -surface_range
plotitem.pcolor_cmax = surface_range
def kml_colorbar(filename):
cmin = -surface_range
cmax = surface_range
geoplot.kml_build_colorbar(filename,
geoplot.googleearth_transparent,
cmin,cmax)
plotfigure.kml_colorbar = kml_colorbar
# --------------------------
# Water Speed - entire gulf
# --------------------------
plotfigure = plotdata.new_plotfigure(name='Currents - Entire Domain',
figno=1)
plotfigure.show = True
plotfigure.use_for_kml = True
plotfigure.kml_use_for_initial_view = False
# These override axes limits set below in plotitems
plotfigure.kml_xlimits = gulf_xlimits
plotfigure.kml_ylimits = gulf_ylimits
plotfigure.kml_figsize = [11.6,9.6]
plotfigure.kml_dpi = 80 # size not so important with contourf
plotfigure.kml_tile_images = False # Tile images for faster loading. Requires GDAL [False]
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotitem = plotaxes.new_plotitem(name='surface', plot_type='2d_contourf')
plotitem.plot_var = geoplot.surface_or_depth
plotitem.contour_levels = speed_contours
plotitem.fill_cmin = min(speed_contours)
plotitem.fill_cmax = max(speed_contours)
cmap= plt.get_cmap('OrRd')
cmap._rgba_under = (0.0,0.0,0.0,0.0)
plotitem.fill_cmap = cmap
def cbar_speeds(filename):
cmin = min(speed_contours)
cmax = max(speed_contours)
geoplot.kml_build_colorbar(filename,cmap,cmin,cmax)
plotfigure.kml_colorbar = cbar_speeds
# ========================================================================
# Houston/Galveston
# ========================================================================
houston_xlimits = [-(95.0 + 26.0 / 60.0), -(94.0 + 25.0 / 60.0)]
houston_ylimits = [29.1, 29.0 + 55.0 / 60.0]
houston_shrink = 0.9
#No need to worry about fitting the plot exactly if we are not using
# the transparent colormap with pcolor.
#num_cells = [116, 96]
#dx = (gulf_xlimits[1] - float(gulf_xlimits[0]))/num_cells[0] # = 0.25
#dy = (gulf_ylimits[1] - float(gulf_ylimits[0]))/num_cells[1] # = 0.25
#houston_xlimits = [gulf_xlimits[0] + 14*dx, gulf_xlimits[0] + 21*dx] # [-95.25, -94.5]
#houston_ylimits = [gulf_ylimits[0] + 82*dy, gulf_ylimits[0] + 88*dy] # [-95.25, -94.5]
#figsize = [(21-14)*dx,(88-82)*dy] # relative to [11.6, 9.6] occupied by larger grid
figsize = [houston_xlimits[1]-houston_xlimits[0],houston_ylimits[1]-houston_ylimits[0]]
dpi = 400
# --------------------------------------
# Surface Elevations - Houston/Galveston
# --------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface - Houston/Galveston',
figno=2)
plotfigure.show = True
plotfigure.use_for_kml = True
plotfigure.kml_xlimits = houston_xlimits
plotfigure.kml_ylimits = houston_ylimits
plotfigure.kml_dpi = dpi # data is not more resolve than this
plotfigure.kml_figsize = figsize
plotfigure.kml_tile_images = False
# pcolor for water.
plotaxes = plotfigure.new_plotaxes()
plotitem = plotaxes.new_plotitem(name='surface',plot_type='2d_contourf')
plotitem.contour_levels = surface_contours
plotitem.fill_cmin = min(surface_contours)
plotitem.fill_cmax = max(surface_contours)
# what is the colormap used here?
#plotfigure.kml_colorbar = cbar_houston
# --------------------------------
# Water Speed - Houston/Galveston
# --------------------------------
plotfigure = plotdata.new_plotfigure(name='Currents - Houston/Galveston',
figno=3)
plotfigure.show = True
plotfigure.use_for_kml = True
# These override axes limits set below in plotitems
plotfigure.kml_xlimits = houston_xlimits
plotfigure.kml_ylimits = houston_ylimits
plotfigure.kml_figsize = figsize
plotfigure.kml_dpi = dpi # data is not more resolve than this
plotfigure.kml_tile_images = False # Tile images for faster loading. Requires GDAL [False]
# Water
plotaxes = plotfigure.new_plotaxes()
plotitem = plotaxes.new_plotitem(name='surface', plot_type='2d_contourf')
plotitem.plot_var = geoplot.surface_or_depth
plotitem.contour_levels = speed_contours
plotitem.fill_cmin = min(speed_contours)
plotitem.fill_cmax = max(speed_contours)
cmap= plt.get_cmap('OrRd')
cmap._rgba_under = (0.0,0.0,0.0,0.0)
plotitem.fill_cmap = cmap
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# plotfigure.kwargs['figsize'] = (16,10)
def gauge_after_axes(cd):
if cd.gaugeno in [1,2,3,4]:
axes = plt.gca()
# # Add Kennedy gauge data
# kennedy_gauge = kennedy_gauges[gauge_name_trans[cd.gaugeno]]
# axes.plot(kennedy_gauge['t'] - seconds2days(date2seconds(gauge_landfall[0])),
# kennedy_gauge['mean_water'] + kennedy_gauge['depth'], 'k-',
# label='Gauge Data')
# Add GeoClaw gauge data
geoclaw_gauge = cd.gaugesoln
axes.plot(seconds2days(geoclaw_gauge.t - date2seconds(gauge_landfall[1])),
geoclaw_gauge.q[3,:] + gauge_surface_offset[0], 'b--',
label="GeoClaw")
# Add ADCIRC gauge data
# ADCIRC_gauge = ADCIRC_gauges[kennedy_gauge['gauge_no']]
# axes.plot(seconds2days(ADCIRC_gauge[:,0] - gauge_landfall[2]),
# ADCIRC_gauge[:,1] + gauge_surface_offset[1], 'r-.', label="ADCIRC")
# Fix up plot
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2,1])
axes.set_ylim([-1,5])
axes.set_xticks([-2,-1,0,1])
axes.set_xticklabels([r"$-2$",r"$-1$",r"$0$",r"$1$"])
axes.grid(True)
axes.legend()
plt.hold(False)
surgeplot.gauge_afteraxes(cd)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2,1]
#plotaxes.xlabel = "Days from landfall"
#plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1,5]
plotaxes.title = 'Surface'
plotaxes.afteraxes = gauge_after_axes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = [0,1,2,3] # list of figures to print
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.html = False # create html files of plots?
plotdata.latex = False # create latex file of plots?
plotdata.kml = True
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
# Load data from output
amrdata = clawpack.clawutil.data.ClawInputData(2)
amrdata.read('claw.data')
physics = clawpack.geoclaw.data.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
topo_data = clawpack.geoclaw.data.TopographyData()
topo_data.read(os.path.join(plotdata.outdir, 'topo.data'))
surge_data = clawpack.geoclaw.data.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = clawpack.geoclaw.data.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surge.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2008, 8, 1, 12) - datetime.datetime(2008,1,1,0)
landfall = landfall_dt.days * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surge.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Limits for plots
full_xlimits = [amrdata.lower[0],amrdata.upper[0]]
full_ylimits = [amrdata.lower[1],amrdata.upper[1]]
# Color limits
surface_range = 1.0
speed_range = 2.0
xlimits = full_xlimits
ylimits = full_ylimits
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
speed_limits = [0.0,speed_range]
wind_limits = [0,55]
pressure_limits = [966,1013]
ref_lines = []
# ==========================================================================
# Generic helper functions
# ==========================================================================
def pcolor_afteraxes(current_data):
surge_afteraxes(current_data)
surge.gauge_locations(current_data)
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
def bathy_ref_lines(current_data):
plt.hold(True)
y = [amrdata.ylower,amrdata.yupper]
for ref_line in ref_lines:
plt.plot([ref_line,ref_line],y,'y--')
plt.hold(False)
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# ========================================================================
# Surface Elevations - Entire Ocean
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface', figno=0)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
surge.add_surface_elevation(plotaxes,bounds=surface_limits)
surge.add_land(plotaxes)
# ========================================================================
# Water Speed - Entire Gulf
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='speed', figno=1)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
# Speed
surge.add_speed(plotaxes,bounds=speed_limits)
# Land
surge.add_land(plotaxes)
# ========================================================================
# Hurricane forcing - Entire gulf
# ========================================================================
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure', figno=2)
plotfigure.show = surge_data.pressure_forcing
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_pressure(plotaxes,bounds=pressure_limits)
# add_pressure(plotaxes)
surge.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',figno=4)
plotfigure.show = surge_data.wind_forcing
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_wind(plotaxes,bounds=wind_limits,plot_type='imshow')
# add_wind(plotaxes,bounds=wind_limits,plot_type='contour')
# add_wind(plotaxes,bounds=wind_limits,plot_type='quiver')
surge.add_land(plotaxes)
# Wind field components
plotfigure = plotdata.new_plotfigure(name='Wind Components',figno=5)
plotfigure.show = surge_data.wind_forcing
plotfigure.kwargs = {'figsize':(16,6)}
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(121)"
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "X-Component of Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = surge.wind_x
plotitem.imshow_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.imshow_cmin = -wind_limits[1]
plotitem.imshow_cmax = wind_limits[1]
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(122)"
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Y-Component of Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = surge.wind_y
plotitem.imshow_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.imshow_cmin = -wind_limits[1]
plotitem.imshow_cmax = wind_limits[1]
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
# plotaxes.xlimits = [0.0,amrdata.tfinal]
# plotaxes.ylimits = [0,150.0]
plotaxes.ylimits = surface_limits
plotaxes.title = 'Surface'
plotaxes.afteraxes = surge.gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'r-'
# =================
# Plot bathymetry
# =================
plotfigure = plotdata.new_plotfigure(name='Bathymetry', figno=301)
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Bathymetry"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type="2d_pcolor")
plotitem.plot_var = geoplot.topo
# plotitem.pcolor_cmap = geoplot.seafloor_colormap
plotitem.pcolor_cmin = topo_data.basin_depth
plotitem.pcolor_cmax = 300.0
plotitem.add_colorbar = True
surge.add_land(plotaxes)
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
# plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
# type='each_gauge')
# plotfigure.clf_each_gauge = True
#
# # Set up for axes in this figure:
# plotaxes = plotfigure.new_plotaxes()
# plotaxes.xlimits = 'auto'
# plotaxes.ylimits = 'auto'
# plotaxes.title = 'Surface'
#
# # Plot surface as blue curve:
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 3
# plotitem.plotstyle = 'b-'
#
# # Plot topo as green curve:
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.show = False
#
# def gaugetopo(current_data):
# q = current_data.q
# h = q[0,:]
# eta = q[3,:]
# topo = eta - h
# return topo
#
# plotitem.plot_var = gaugetopo
# plotitem.plotstyle = 'g-'
#
# def add_zeroline(current_data):
# from pylab import plot, legend, xticks, floor
# t = current_data.t
# #legend(('surface','topography'),loc='lower left')
# plot(t, 0*t, 'k')
# n = int(floor(t.max()/3600.) + 2)
# xticks([3600*i for i in range(n)])
#
# plotaxes.afteraxes = add_zeroline
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
# plotdata.print_framenos = [45,46,47,48]
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
fig_num_counter = surge.plot.figure_counter()
# Load data from output
physics = clawpack.geoclaw.data.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = clawpack.geoclaw.surge.data.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = clawpack.geoclaw.surge.data.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surge.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2005,8,29,6) - datetime.datetime(2005,1,1,0)
landfall = (landfall_dt.days - 1.0) * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surge.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Limits for plots
full_xlimits = [-99.0,-50.0]
full_ylimits = [8.0,32.0]
full_shrink = 0.5
# Color limits
surface_range = 5.0
speed_range = 3.0
xlimits = full_xlimits
ylimits = full_ylimits
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
speed_limits = [0.0,speed_range]
wind_limits = [0,40]
# wind_limits = [-0.002,0.002]
pressure_limits = [966,1013]
friction_bounds = [0.01,0.04]
# vorticity_limits = [-1.e-2,1.e-2]
def pcolor_afteraxes(current_data):
surge_afteraxes(current_data)
surge.gauge_locations(current_data,gaugenos=[6])
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# ========================================================================
# Surface Elevations - Entire Gulf
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
surge.add_surface_elevation(plotaxes,bounds=surface_limits,shrink=full_shrink)
surge.add_land(plotaxes,topo_min=-10.0,topo_max=5.0)
surge.add_bathy_contours(plotaxes)
# ========================================================================
# Water Speed - Entire Gulf
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Currents - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
# Speed
surge.add_speed(plotaxes,bounds=speed_limits,shrink=full_shrink)
# Land
surge.add_land(plotaxes)
surge.add_bathy_contours(plotaxes)
# ========================================================================
# Hurricane forcing - Entire gulf
# ========================================================================
# Friction field
plotfigure = plotdata.new_plotfigure(name='Friction',
figno=fig_num_counter.get_counter())
plotfigure.show = friction_data.variable_friction and False
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Manning's N Coefficients"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_friction(plotaxes,bounds=friction_bounds)
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_pressure(plotaxes,bounds=pressure_limits)
# add_pressure(plotaxes)
surge.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_wind(plotaxes,bounds=wind_limits,plot_type='imshow')
# add_wind(plotaxes,bounds=wind_limits,plot_type='contour')
# add_wind(plotaxes,bounds=wind_limits,plot_type='quiver')
surge.add_land(plotaxes)
# Surge field
plotfigure = plotdata.new_plotfigure(name='Surge Field',
figno=fig_num_counter.get_counter())
plotfigure.show = ((surge_data.wind_forcing or surge_data.pressure_forcing)
and True)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Storm Surge Source Term S"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surge.pressure_field + 1
plotitem.pcolor_cmap = plt.get_cmap('PuBu')
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 1e-3
plotitem.add_colorbar = True
plotitem.colorbar_shrink = 0.5
plotitem.colorbar_label = "Source Strength"
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,0,0]
surge.add_land(plotaxes)
plotfigure = plotdata.new_plotfigure(name='Friction/Coriolis Source',
figno=fig_num_counter.get_counter())
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Friction/Coriolis Source"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surge.pressure_field + 2
plotitem.pcolor_cmap = plt.get_cmap('PuBu')
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 1e-3
plotitem.add_colorbar = True
plotitem.colorbar_shrink = 0.5
plotitem.colorbar_label = "Source Strength"
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,0,0]
surge.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
# try:
# plotaxes.xlimits = [amrdata.t0,amrdata.tfinal]
# except:
# pass
# plotaxes.ylimits = [0,150.0]
plotaxes.ylimits = 'auto'
plotaxes.title = 'Surface'
plotaxes.afteraxes = surge.gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# ========================================================================
# Water Velocity Components - Entire Gulf
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Velocity Components - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = False
# X-Component
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(121)"
plotaxes.title = 'Velocity, X-Component'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surge.water_u
plotitem.pcolor_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.pcolor_cmin = -speed_limits[1]
plotitem.pcolor_cmax = speed_limits[1]
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
surge.add_land(plotaxes)
# Y-Component
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(122)"
plotaxes.title = 'Velocity, Y-Component'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surge.water_v
plotitem.pcolor_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.pcolor_cmin = -speed_limits[1]
plotitem.pcolor_cmax = speed_limits[1]
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
surge.add_land(plotaxes)
# ==========================================================================
# Depth
# ==========================================================================
plotfigure = plotdata.new_plotfigure(name='Depth - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = False
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'depth'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = 0
plotitem.imshow_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.imshow_cmin = 0
plotitem.imshow_cmax = 100
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,1,1,1,1]
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'ascii'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir, 'amr.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = surgedata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = surgedata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2008, 9, 13, 7) - datetime.datetime(
2008, 1, 1, 0)
landfall = (landfall_dt.days - 1.0) * 24.0 * 60**2 + landfall_dt.seconds
# Color limits
surface_range = 5.0
speed_range = 3.0
eta = physics.sea_level
if not isinstance(eta, list):
eta = [eta]
surface_limits = [eta[0] - surface_range, eta[0] + surface_range]
# surface_contours = numpy.linspace(-surface_range, surface_range,11)
surface_contours = [
-5, -4.5, -4, -3.5, -3, -2.5, -2, -1.5, -1, -0.5, 0.5, 1, 1.5, 2, 2.5,
3, 3.5, 4, 4.5, 5
]
speed_limits = [0.0, speed_range]
speed_contours = numpy.linspace(0.0, speed_range, 13)
wind_limits = [0, 64]
# wind_limits = [-0.002,0.002]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
# vorticity_limits = [-1.e-2,1.e-2]
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
#-----------------------------------------
# Some global kml flags
#-----------------------------------------
plotdata.kml_name = "Ike"
plotdata.kml_starttime = [2008, 9, 3, 15, 0,
0] # Time of event in UTC [None]
plotdata.kml_tz_offset = 5 # Time zone offset (in hours) of event. [None]
plotdata.kml_index_fname = "Ike" # name for .kmz and .kml files ["_GoogleEarth"]
# Set to path where KMZ files will be stored; KML file will then
# link to this path.
# plotdata.kml_publish = 'http://www.domain.edu/path/to/kmz/files'
# ========================================================================
# Entire Gulf
# ========================================================================
gulf_xlimits = [clawdata.lower[0], clawdata.upper[0]]
gulf_ylimits = [clawdata.lower[1], clawdata.upper[1]]
gulf_shrink = 1.0
# --------------------------
# Surface - entire gulf
# --------------------------
plotfigure = plotdata.new_plotfigure(name='Surface - Entire Domain',
figno=0)
plotfigure.show = True
plotfigure.use_for_kml = True
plotfigure.kml_use_for_initial_view = True
# These override axes limits set below in plotitems
plotfigure.kml_xlimits = gulf_xlimits
plotfigure.kml_ylimits = gulf_ylimits
# Resolution - needs to be set carefully for the transparent colormap
rcl = 40
plotfigure.kml_dpi = rcl * 2
plotfigure.kml_figsize = [11.6, 9.6]
plotfigure.kml_tile_images = False # Tile images for faster loading. Requires GDAL [False]
plotaxes = plotfigure.new_plotaxes()
plotitem = plotaxes.new_plotitem(name='surface', plot_type='2d_pcolor')
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.googleearth_transparent
plotitem.pcolor_cmin = -surface_range
plotitem.pcolor_cmax = surface_range
def kml_colorbar(filename):
cmin = -surface_range
cmax = surface_range
geoplot.kml_build_colorbar(filename, geoplot.googleearth_transparent,
cmin, cmax)
plotfigure.kml_colorbar = kml_colorbar
# --------------------------
# Water Speed - entire gulf
# --------------------------
plotfigure = plotdata.new_plotfigure(name='Currents - Entire Domain',
figno=1)
plotfigure.show = True
plotfigure.use_for_kml = True
plotfigure.kml_use_for_initial_view = False
# These override axes limits set below in plotitems
plotfigure.kml_xlimits = gulf_xlimits
plotfigure.kml_ylimits = gulf_ylimits
plotfigure.kml_figsize = [11.6, 9.6]
plotfigure.kml_dpi = 80 # size not so important with contourf
plotfigure.kml_tile_images = False # Tile images for faster loading. Requires GDAL [False]
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotitem = plotaxes.new_plotitem(name='surface', plot_type='2d_contourf')
plotitem.plot_var = geoplot.surface_or_depth
plotitem.contour_levels = speed_contours
plotitem.fill_cmin = min(speed_contours)
plotitem.fill_cmax = max(speed_contours)
cmap = plt.get_cmap('OrRd')
cmap._rgba_under = (0.0, 0.0, 0.0, 0.0)
plotitem.fill_cmap = cmap
def cbar_speeds(filename):
cmin = min(speed_contours)
cmax = max(speed_contours)
geoplot.kml_build_colorbar(filename, cmap, cmin, cmax)
plotfigure.kml_colorbar = cbar_speeds
# ========================================================================
# Houston/Galveston
# ========================================================================
houston_xlimits = [-(95.0 + 26.0 / 60.0), -(94.0 + 25.0 / 60.0)]
houston_ylimits = [29.1, 29.0 + 55.0 / 60.0]
houston_shrink = 0.9
#No need to worry about fitting the plot exactly if we are not using
# the transparent colormap with pcolor.
#num_cells = [116, 96]
#dx = (gulf_xlimits[1] - float(gulf_xlimits[0]))/num_cells[0] # = 0.25
#dy = (gulf_ylimits[1] - float(gulf_ylimits[0]))/num_cells[1] # = 0.25
#houston_xlimits = [gulf_xlimits[0] + 14*dx, gulf_xlimits[0] + 21*dx] # [-95.25, -94.5]
#houston_ylimits = [gulf_ylimits[0] + 82*dy, gulf_ylimits[0] + 88*dy] # [-95.25, -94.5]
#figsize = [(21-14)*dx,(88-82)*dy] # relative to [11.6, 9.6] occupied by larger grid
figsize = [
houston_xlimits[1] - houston_xlimits[0],
houston_ylimits[1] - houston_ylimits[0]
]
dpi = 400
# --------------------------------------
# Surface Elevations - Houston/Galveston
# --------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface - Houston/Galveston',
figno=2)
plotfigure.show = True
plotfigure.use_for_kml = True
plotfigure.kml_xlimits = houston_xlimits
plotfigure.kml_ylimits = houston_ylimits
plotfigure.kml_dpi = dpi # data is not more resolve than this
plotfigure.kml_figsize = figsize
plotfigure.kml_tile_images = False
# pcolor for water.
plotaxes = plotfigure.new_plotaxes()
plotitem = plotaxes.new_plotitem(name='surface', plot_type='2d_contourf')
plotitem.contour_levels = surface_contours
plotitem.fill_cmin = min(surface_contours)
plotitem.fill_cmax = max(surface_contours)
# what is the colormap used here?
#plotfigure.kml_colorbar = cbar_houston
# --------------------------------
# Water Speed - Houston/Galveston
# --------------------------------
plotfigure = plotdata.new_plotfigure(name='Currents - Houston/Galveston',
figno=3)
plotfigure.show = True
plotfigure.use_for_kml = True
# These override axes limits set below in plotitems
plotfigure.kml_xlimits = houston_xlimits
plotfigure.kml_ylimits = houston_ylimits
plotfigure.kml_figsize = figsize
plotfigure.kml_dpi = dpi # data is not more resolve than this
plotfigure.kml_tile_images = False # Tile images for faster loading. Requires GDAL [False]
# Water
plotaxes = plotfigure.new_plotaxes()
plotitem = plotaxes.new_plotitem(name='surface', plot_type='2d_contourf')
plotitem.plot_var = geoplot.surface_or_depth
plotitem.contour_levels = speed_contours
plotitem.fill_cmin = min(speed_contours)
plotitem.fill_cmax = max(speed_contours)
cmap = plt.get_cmap('OrRd')
cmap._rgba_under = (0.0, 0.0, 0.0, 0.0)
plotitem.fill_cmap = cmap
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# plotfigure.kwargs['figsize'] = (16,10)
def gauge_after_axes(cd):
if cd.gaugeno in [1, 2, 3, 4]:
axes = plt.gca()
# # Add Kennedy gauge data
# kennedy_gauge = kennedy_gauges[gauge_name_trans[cd.gaugeno]]
# axes.plot(kennedy_gauge['t'] - seconds2days(date2seconds(gauge_landfall[0])),
# kennedy_gauge['mean_water'] + kennedy_gauge['depth'], 'k-',
# label='Gauge Data')
# Add GeoClaw gauge data
geoclaw_gauge = cd.gaugesoln
axes.plot(seconds2days(geoclaw_gauge.t -
date2seconds(gauge_landfall[1])),
geoclaw_gauge.q[3, :] + gauge_surface_offset[0],
'b--',
label="GeoClaw")
# Add ADCIRC gauge data
# ADCIRC_gauge = ADCIRC_gauges[kennedy_gauge['gauge_no']]
# axes.plot(seconds2days(ADCIRC_gauge[:,0] - gauge_landfall[2]),
# ADCIRC_gauge[:,1] + gauge_surface_offset[1], 'r-.', label="ADCIRC")
# Fix up plot
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2, 1])
axes.set_ylim([-1, 5])
axes.set_xticks([-2, -1, 0, 1])
axes.set_xticklabels([r"$-2$", r"$-1$", r"$0$", r"$1$"])
axes.grid(True)
axes.legend()
plt.hold(False)
surgeplot.gauge_afteraxes(cd)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 1]
#plotaxes.xlabel = "Days from landfall"
#plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1, 5]
plotaxes.title = 'Surface'
plotaxes.afteraxes = gauge_after_axes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = [0, 1, 2, 3] # list of figures to print
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.html = False # create html files of plots?
plotdata.latex = False # create latex file of plots?
plotdata.kml = True
return plotdata
def setplot(plotdata=None):
""""""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# clear any old figures,axes,items data
plotdata.clearfigures()
plotdata.format = 'ascii'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Calculate landfall time
# Landfall for Ike in Houston was September 13th, at 7 UTC
landfall_dt = datetime.datetime(2008, 9, 13, 7) - \
datetime.datetime(2008, 1, 1, 0)
landfall = landfall_dt.days * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
def surge_afteraxes(cd):
surgeplot.surge_afteraxes(cd, track, landfall, plot_direction=False,
kwargs={"markersize": 4})
# Color limits
surface_limits = [-5.0, 5.0]
speed_limits = [0.0, 3.0]
wind_limits = [0, 64]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
def gulf_after_axes(cd):
# plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
surge_afteraxes(cd)
def latex_after_axes(cd):
# plt.subplot_adjust()
surge_afteraxes(cd)
def friction_after_axes(cd):
# plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
plt.title(r"Manning's $n$ Coefficient")
# surge_afteraxes(cd)
# ==========================================================================
# Plot specifications
# ==========================================================================
regions = {"Gulf": {"xlimits": (clawdata.lower[0], clawdata.upper[0]),
"ylimits": (clawdata.lower[1], clawdata.upper[1]),
"figsize": (6.4, 4.8)},
"LaTex Shelf": {"xlimits": (-97.5, -88.5),
"ylimits": (27.5, 30.5),
"figsize": (8, 2.7)}}
for (name, region_dict) in regions.iteritems():
# Surface Figure
plotfigure = plotdata.new_plotfigure(name="Surface - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Surface"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Speed Figure
plotfigure = plotdata.new_plotfigure(name="Currents - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Currents"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes, bounds=speed_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction')
plotfigure.show = friction_data.variable_friction and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes, bounds=friction_bounds, shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
#
# Hurricane Forcing fields
#
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Gauge Surfaces', figno=300,
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1, 5]
plotaxes.title = 'Surface'
def gauge_afteraxes(cd):
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes, landfall=landfall)
# Fix up plot - in particular fix time labels
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2, 1])
axes.set_ylim([-1, 5])
axes.set_xticks([-2, -1, 0, 1])
axes.set_xticklabels([r"$-2$", r"$-1$", r"$0$", r"$1$"])
axes.grid(True)
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata, gaugenos='all',
format_string='ko', add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge Locations")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Locations'
plotaxes.scaled = True
plotaxes.xlimits = [-95.5, -94]
plotaxes.ylimits = [29.0, 30.0]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2, 3, 4] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # parallel plotting
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
fig_num_counter = surge.figure_counter()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir,'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir,'amr.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surge.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2008,9,13,7) - datetime.datetime(2008,1,1,0)
landfall = (landfall_dt.days - 1.0) * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surge.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Color limits
surface_range = 5.0
speed_range = 3.0
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
# surface_contours = numpy.linspace(-surface_range, surface_range,11)
surface_contours = [-5,-4.5,-4,-3.5,-3,-2.5,-2,-1.5,-1,-0.5,0.5,1,1.5,2,2.5,3,3.5,4,4.5,5]
surface_ticks = [-5,-4,-3,-2,-1,0,1,2,3,4,5]
surface_labels = [str(value) for value in surface_ticks]
speed_limits = [0.0,speed_range]
speed_contours = numpy.linspace(0.0,speed_range,13)
speed_ticks = [0,1,2,3]
speed_labels = [str(value) for value in speed_ticks]
wind_limits = [0,64]
# wind_limits = [-0.002,0.002]
pressure_limits = [935,1013]
friction_bounds = [0.01,0.04]
# vorticity_limits = [-1.e-2,1.e-2]
# def pcolor_afteraxes(current_data):
# surge_afteraxes(current_data)
# surge.plot.gauge_locations(current_data,gaugenos=[6])
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
def add_custom_colorbar_ticks_to_axes(axes, item_name, ticks, tick_labels=None):
axes.plotitem_dict[item_name].colorbar_ticks = ticks
axes.plotitem_dict[item_name].colorbar_tick_labels = tick_labels
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# ========================================================================
# Entire Gulf
# ========================================================================
gulf_xlimits = [clawdata.lower[0],clawdata.upper[0]]
gulf_ylimits = [clawdata.lower[1],clawdata.upper[1]]
gulf_shrink = 0.9
def gulf_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
surge_afteraxes(cd)
#
# Surface
#
plotfigure = plotdata.new_plotfigure(name='Surface - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
surge.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=gulf_shrink)
surge.add_land(plotaxes,topo_min=-10.0,topo_max=5.0)
# surge.plot.add_bathy_contours(plotaxes)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1,1,1,1,1,1,1,1]
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
# Speed
surge.add_speed(plotaxes, plot_type='contourf',
contours=speed_contours,
shrink=gulf_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
# Land
surge.add_land(plotaxes)
surge.add_bathy_contours(plotaxes)
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction',
figno=fig_num_counter.get_counter())
plotfigure.show = friction_data.variable_friction and True
def friction_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
plt.title(r"Manning's $n$ Coefficient")
# surge_afteraxes(cd)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surge.add_friction(plotaxes,bounds=friction_bounds,shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
# ========================================================================
# LaTex Shelf
# ========================================================================
latex_xlimits = [-97.5,-88.5]
latex_ylimits = [27.5,30.5]
latex_shrink = 1.0
def latex_after_axes(cd):
if article:
plt.subplots_adjust(left=0.07, bottom=0.14, right=1.0, top=0.86)
else:
plt.subplots_adjust(right=1.0)
surge_afteraxes(cd)
#
# Surface
#
plotfigure = plotdata.new_plotfigure(name='Surface - LaTex Shelf',
figno=fig_num_counter.get_counter())
plotfigure.show = True
if article:
plotfigure.kwargs = {'figsize':(8,2.7), 'facecolor':'none'}
else:
plotfigure.kwargs = {'figsize':(9,2.7), 'facecolor':'none'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = latex_xlimits
plotaxes.ylimits = latex_ylimits
plotaxes.afteraxes = latex_after_axes
surge.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=latex_shrink)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
# plotaxes.afteraxes = lambda cd: article_latex_after_axes(cd, landfall)
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', [-5,-2.5,0,2.5,5.0],
["-5.0","-2.5"," 0"," 2.5"," 5.0"])
# plotaxes.plotitem_dict['surface'].contour_cmap = plt.get_cmap('OrRd')
# surge.plot.add_surface_elevation(plotaxes,plot_type='contour')
surge.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# Plot using jet and 0.0 to 5.0 to match figgen generated ADCIRC results
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - LaTex Shelf',
figno=fig_num_counter.get_counter())
plotfigure.show = True
if article:
plotfigure.kwargs = {'figsize':(8,2.7), 'facecolor':'none'}
else:
plotfigure.kwargs = {'figsize':(9,2.7), 'facecolor':'none'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = latex_xlimits
plotaxes.ylimits = latex_ylimits
plotaxes.afteraxes = latex_after_axes
surge.add_speed(plotaxes, plot_type='contourf',
contours=speed_contours,
shrink=latex_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
# surge.plot.add_surface_elevation(plotaxes,plot_type='contour')
surge.add_land(plotaxes)
# plotaxes.plotitem_dict['speed'].amr_patchedges_show = [1,1,0,0,0,0,0]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# ========================================================================
# Houston/Galveston
# ========================================================================
houston_xlimits = [-(95.0 + 26.0 / 60.0), -(94.0 + 25.0 / 60.0)]
houston_ylimits = [29.1, 29.0 + 55.0 / 60.0]
houston_shrink = 0.9
def houston_after_axes(cd):
if article:
plt.subplots_adjust(left=0.05, bottom=0.07, right=0.99, top=0.92)
else:
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
# surge.plot.gauge_locations(cd)
#
# Surface Elevations
#
plotfigure = plotdata.new_plotfigure(name='Surface - Houston/Galveston',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# if article:
# plotfigure.kwargs['figsize'] =
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = houston_xlimits
plotaxes.ylimits = houston_ylimits
plotaxes.afteraxes = houston_after_axes
surge.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=houston_shrink)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
surge.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# surge.plot.add_bathy_contours(plotaxes)
# Plot using jet and 0.0 to 5.0 to match figgen generated ADCIRC results
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - Houston/Galveston',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = houston_xlimits
plotaxes.ylimits = houston_ylimits
plotaxes.afteraxes = houston_after_axes
surge.add_speed(plotaxes, plot_type='contourf',
contours=speed_contours,
shrink=houston_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
surge.add_land(plotaxes)
# surge.plot.add_bathy_contours(plotaxes)
# plotaxes.plotitem_dict['speed'].amr_patchedges_show = [1,1,1,1,1,1,1,1]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,1,1,1,1,1]
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# ==========================
# Hurricane Forcing fields
# ==========================
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
surge.add_pressure(plotaxes, bounds=pressure_limits, shrink=gulf_shrink)
surge.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
surge.add_wind(plotaxes, bounds=wind_limits, plot_type='pcolor',
shrink=gulf_shrink)
surge.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# plotfigure.kwargs['figsize'] = (16,10)
def gauge_after_axes(cd):
if cd.gaugeno in [1,2,3,4]:
axes = plt.gca()
# # Add Kennedy gauge data
# kennedy_gauge = kennedy_gauges[gauge_name_trans[cd.gaugeno]]
# axes.plot(kennedy_gauge['t'] - seconds2days(date2seconds(gauge_landfall[0])),
# kennedy_gauge['mean_water'] + kennedy_gauge['depth'], 'k-',
# label='Gauge Data')
# Add GeoClaw gauge data
geoclaw_gauge = cd.gaugesoln
axes.plot(seconds2days(geoclaw_gauge.t - date2seconds(gauge_landfall[1])),
geoclaw_gauge.q[3,:] + gauge_surface_offset[0], 'b--',
label="GeoClaw")
# Add ADCIRC gauge data
# ADCIRC_gauge = ADCIRC_gauges[kennedy_gauge['gauge_no']]
# axes.plot(seconds2days(ADCIRC_gauge[:,0] - gauge_landfall[2]),
# ADCIRC_gauge[:,1] + gauge_surface_offset[1], 'r-.', label="ADCIRC")
# Fix up plot
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2,1])
axes.set_ylim([-1,5])
axes.set_xticks([-2,-1,0,1])
axes.set_xticklabels([r"$-2$",r"$-1$",r"$0$",r"$1$"])
axes.grid(True)
axes.legend()
plt.hold(False)
# surge.plot.gauge_afteraxes(cd)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2,1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1,5]
plotaxes.title = 'Surface'
plotaxes.afteraxes = gauge_after_axes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# =====================
# Gauge Location Plot
# =====================
gauge_xlimits = [-95.5, -94]
gauge_ylimits = [29.0, 30.0]
gauge_location_shrink = 0.75
def gauge_after_axes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
surge.gauge_locations(cd, gaugenos=[1, 2, 3, 4])
plt.title("Gauge Locations")
plotfigure = plotdata.new_plotfigure(name='Gauge Locations',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = gauge_xlimits
plotaxes.ylimits = gauge_ylimits
plotaxes.afteraxes = gauge_after_axes
surge.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=gauge_location_shrink)
# surge.plot.add_surface_elevation(plotaxes, plot_type="contourf")
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
surge.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
# plotaxes.plotitem_dict['surface'].add_colorbar = False
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('gist_yarg')
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# ==============================================================
# Debugging Plots, only really work if using interactive plots
# ==============================================================
#
# Water Velocity Components
#
plotfigure = plotdata.new_plotfigure(name='Velocity Components - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = False
# X-Component
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(121)"
plotaxes.title = 'Velocity, X-Component'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surge.water_u
plotitem.pcolor_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.pcolor_cmin = -speed_limits[1]
plotitem.pcolor_cmax = speed_limits[1]
plotitem.colorbar_shrink = gulf_shrink
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
surge.add_land(plotaxes)
# Y-Component
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(122)"
plotaxes.title = 'Velocity, Y-Component'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surge.water_v
plotitem.pcolor_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.pcolor_cmin = -speed_limits[1]
plotitem.pcolor_cmax = speed_limits[1]
plotitem.colorbar_shrink = gulf_shrink
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
surge.add_land(plotaxes)
#
# Depth
#
plotfigure = plotdata.new_plotfigure(name='Depth - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = False
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'depth'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = 0
plotitem.imshow_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.imshow_cmin = 0
plotitem.imshow_cmax = 100
plotitem.colorbar_shrink = gulf_shrink
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,1,1,1,1]
# Surge field
plotfigure = plotdata.new_plotfigure(name='Surge Field',
figno=fig_num_counter.get_counter())
plotfigure.show = ((surge_data.wind_forcing or surge_data.pressure_forcing)
and False)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Storm Surge Source Term S"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surge.pressure_field + 1
plotitem.pcolor_cmap = plt.get_cmap('PuBu')
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 1e-3
plotitem.add_colorbar = True
plotitem.colorbar_shrink = gulf_shrink
plotitem.colorbar_label = "Source Strength"
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,0,0]
surge.add_land(plotaxes)
plotfigure = plotdata.new_plotfigure(name='Friction/Coriolis Source',
figno=fig_num_counter.get_counter())
plotfigure.show = False
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Friction/Coriolis Source"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surge.pressure_field + 2
plotitem.pcolor_cmap = plt.get_cmap('PuBu')
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 1e-3
plotitem.add_colorbar = True
plotitem.colorbar_shrink = gulf_shrink
plotitem.colorbar_label = "Source Strength"
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,0,0]
surge.add_land(plotaxes)
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
if article:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = [54,60,66,72,78,84] # list of frames to print
plotdata.print_gaugenos = [1,2,3,4] # list of gauges to print
plotdata.print_fignos = [4,5,6,7,10,3,300] # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
else:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1,2,3,4] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
fig_num_counter = surgeplot.figure_counter()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir,'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir,'amr.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2008, 8, 1, 12) - datetime.datetime(2008,1,1,0)
landfall = landfall_dt.days * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surgeplot.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Limits for plots
full_xlimits = [clawdata.lower[0], clawdata.upper[0]]
full_ylimits = [clawdata.lower[1], clawdata.upper[1]]
# Color limits
surface_range = 1.0
speed_range = 2.0
xlimits = full_xlimits
ylimits = full_ylimits
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
speed_limits = [0.0,speed_range]
wind_limits = [0,55]
pressure_limits = [966,1013]
ref_lines = []
# ==========================================================================
# Generic helper functions
# ==========================================================================
def pcolor_afteraxes(current_data):
surge_afteraxes(current_data)
# surgeplot.gauge_locations(current_data)
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
def bathy_ref_lines(current_data):
pass
# plt.hold(True)
# y = [amrdata.ylower,amrdata.yupper]
# for ref_line in ref_lines:
# plt.plot([ref_line,ref_line],y,'y--')
# plt.hold(False)
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# ========================================================================
# Surface Elevations - Entire Domain
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface', figno=0)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes,topo_min=-10.0,topo_max=5.0)
# ========================================================================
# Water Speed - Entire Domain
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='speed', figno=1)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
# Speed
surgeplot.add_speed(plotaxes,bounds=speed_limits)
# Land
surgeplot.add_land(plotaxes)
# ========================================================================
# Hurricane forcing - Entire Domain
# ========================================================================
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure', figno=2)
plotfigure.show = surge_data.pressure_forcing
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes,bounds=pressure_limits)
# add_pressure(plotaxes)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',figno=4)
plotfigure.show = surge_data.wind_forcing
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes,bounds=wind_limits,plot_type='imshow')
# add_wind(plotaxes,bounds=wind_limits,plot_type='contour')
# add_wind(plotaxes,bounds=wind_limits,plot_type='quiver')
surgeplot.add_land(plotaxes)
# Wind field components
plotfigure = plotdata.new_plotfigure(name='Wind Components',figno=5)
plotfigure.show = surge_data.wind_forcing and False
plotfigure.kwargs = {'figsize':(16,6)}
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(121)"
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "X-Component of Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = surgeplot.wind_x
plotitem.imshow_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.imshow_cmin = -wind_limits[1]
plotitem.imshow_cmax = wind_limits[1]
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(122)"
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Y-Component of Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = surgeplot.wind_y
plotitem.imshow_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.imshow_cmin = -wind_limits[1]
plotitem.imshow_cmax = wind_limits[1]
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
# plotaxes.xlimits = [0.0,amrdata.tfinal]
# plotaxes.ylimits = [0,150.0]
plotaxes.ylimits = surface_limits
plotaxes.title = 'Surface'
plotaxes.afteraxes = surgeplot.gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'r-'
# =================
# Plot bathymetry
# =================
plotfigure = plotdata.new_plotfigure(name='Bathymetry', figno=301)
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Bathymetry"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type="2d_pcolor")
plotitem.plot_var = geoplot.topo
# plotitem.pcolor_cmap = geoplot.seafloor_colormap
plotitem.pcolor_cmin = -3000.0
plotitem.pcolor_cmax = 300.0
plotitem.add_colorbar = True
surgeplot.add_land(plotaxes)
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
# plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
# type='each_gauge')
# plotfigure.clf_each_gauge = True
#
# # Set up for axes in this figure:
# plotaxes = plotfigure.new_plotaxes()
# plotaxes.xlimits = 'auto'
# plotaxes.ylimits = 'auto'
# plotaxes.title = 'Surface'
#
# # Plot surface as blue curve:
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 3
# plotitem.plotstyle = 'b-'
#
# # Plot topo as green curve:
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.show = False
#
# def gaugetopo(current_data):
# q = current_data.q
# h = q[0,:]
# eta = q[3,:]
# topo = eta - h
# return topo
#
# plotitem.plot_var = gaugetopo
# plotitem.plotstyle = 'g-'
#
# def add_zeroline(current_data):
# from pylab import plot, legend, xticks, floor
# t = current_data.t
# #legend(('surface','topography'),loc='lower left')
# plot(t, 0*t, 'k')
# n = int(floor(t.max()/3600.) + 2)
# xticks([3600*i for i in range(n)])
#
# plotaxes.afteraxes = add_zeroline
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
# plotdata.print_framenos = [45,46,47,48]
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# plotdata.format = 'binary'
plotdata.format = 'ascii'
# Load data from output
claw_data = clawdata.ClawInputData(2)
claw_data.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Set afteraxes function
surge_afteraxes = lambda cd: surgeplot.surge_afteraxes(
cd, track, plot_direction=False)
# Color limits
surface_range = 4.5
speed_range = 1.0
# speed_range = 1.e-2
eta = physics.sea_level
if not isinstance(eta, list):
eta = [eta]
surface_limits = [eta[0] - surface_range, eta[0] + surface_range]
speed_limits = [0.0, speed_range]
wind_limits = [0, 55]
pressure_limits = [966, 1013]
friction_bounds = [0.01, 0.04]
vorticity_limits = [-1.e-2, 1.e-2]
land_bounds = [-10, 50]
# ==========================================================================
# Plot specifications
# ==========================================================================
# Limits for plots
regions = {
'Full Domain': {
"xlimits": [claw_data.lower[0], claw_data.upper[0]],
"ylimits": [claw_data.lower[1], claw_data.upper[1]],
"shrink": 1.0,
"figsize": [6.4, 4.8]
},
'Mumbai Region': {
"xlimits": [70, 75],
"ylimits": [17, 22],
"shrink": 1.0,
"figsize": [6.4, 4.8]
},
'Mumbai': {
"xlimits": [72.6, 73.15],
"ylimits": [18.80, 19.25],
"shrink": 1.0,
"figsize": [6.4, 4.8]
}
}
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos='all',
format_string='ko',
add_labels=True)
for (name, region_dict) in regions.items():
# ========================================================================
# Surface Elevations
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface - %s' % name)
plotfigure.show = True
#plotfigure = plotdata.new_plotfigure(name="Gauge Locations")
#plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = region_dict['xlimits']
plotaxes.ylimits = region_dict['ylimits']
plotaxes.afteraxes = surge_afteraxes
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes,
bounds=surface_limits,
shrink=region_dict['shrink'])
surgeplot.add_land(plotaxes, bounds=land_bounds)
plotaxes.plotitem_dict['land'].amr_patchedges_show = [1, 0, 0]
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1, 0, 0]
# ========================================================================
# Water Speed
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Currents - %s' % name)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = region_dict['xlimits']
plotaxes.ylimits = region_dict['ylimits']
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes,
bounds=speed_limits,
shrink=region_dict['shrink'])
surgeplot.add_land(plotaxes, bounds=land_bounds)
# ========================================================================
# Hurricane forcing - Entire Atlantic
# ========================================================================
# Friction field
plotfigure = plotdata.new_plotfigure(name='Friction')
plotfigure.show = False
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Full Domain']['xlimits']
plotaxes.ylimits = regions['Full Domain']['ylimits']
plotaxes.title = "Manning's N Coefficients"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes, bounds=friction_bounds)
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Full Domain']['xlimits']
plotaxes.ylimits = regions['Full Domain']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes, bounds=[-10, 500])
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Full Domain']['xlimits']
plotaxes.ylimits = regions['Full Domain']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits, plot_type='imshow')
surgeplot.add_land(plotaxes, bounds=[-10, 500])
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
def gauge_afteraxes(cd):
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes)
# Fix up plot - in particular fix time labels
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([0, 6])
axes.set_xticks([0, 1, 2, 3, 4, 5, 6])
axes.set_xticklabels(
[r"$0$", r"$1$", r"$2$", r"$3$", r"$4$", r"$5$", r"$6$"])
#axes.set_ylim([-1, 5])
axes.grid(True)
# def gauge_afteraxes(cd):
# station_id, station_name = stations[cd.gaugeno-1]
# seconds_rel_landfall, actual_level = get_actual_water_levels(station_id)
#
# axes = plt.gca()
# #surgeplot.plot_landfall_gauge(cd.gaugesoln, axes, landfall=landfall)
# axes.plot(seconds_rel_landfall, actual_level, 'g')
#
# # Fix up plot - in particular fix time labels
# axes.set_title(station_name)
# axes.set_xlabel('Seconds relative to landfall')
# axes.set_ylabel('Surface (m)')
# axes.set_xlim([days2seconds(-2), days2seconds(1)])
# axes.set_ylim([0, 4])
# axes.set_xticks([ days2seconds(-2), days2seconds(-1), 0,
#days2seconds(1)])
#axes.set_xticklabels([r"$-3$", r"$-2$", r"$-1$", r"$0$", r"$1$"])
#axes.grid(True)
# def current_afterxes(cd):
# station_id, station_name = stations[cd.gaugeno-1]
# if len(station_id)==6:
# seconds_rel_landfall, currents = get_actual_currents(station_id)
#
# axes = plt.gca()
# #surgeplot.plot_landfall_gauge(cd.gaugesoln, axes,
# landfall=landfall)
# axes.plot(seconds_rel_landfall, currents, 'g')
#
# # Fix up plot - in particular fix time labels
# axes.set_title(station_name)
# axes.set_xlabel('Seconds relative to landfall')
# axes.set_ylabel('Surface (m)')
# axes.set_xlim([days2seconds(-2), days2seconds(1)])
# axes.set_xticks([ days2seconds(-2), days2seconds(-1), 0,
# days2seconds(1)])
# #axes.set_xticklabels([r"$-3$", r"$-2$", r"$-1$", r"$0$", r"$1$"])
# #axes.grid(True)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# Speeds
# plotfigure = plotdata.new_plotfigure(name='Currents', figno=400, \
# type='each_gauge')
# plotfigure.show = True
# plotfigure.clf_each_gauge = True
# plotaxes = plotfigure.new_plotaxes()
#plotaxes.afteraxes = current_afterxes
# plotaxes.axescmd = 'subplot(122)'
# try:
# plotaxes.xlimits = [amrdata.t0, amrdata.tfinal]
# except:
# pass
# plotaxes.ylimits = surface_limits
#plotaxes.title = 'Momenta'
# plotaxes.afteraxes = surge.gauge_afteraxes
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = calc_currents
# plotitem.plotstyle = 'r-.'
#plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
#plotitem.plot_var = 2
#plotitem.plotstyle = 'b-'
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
fig_num_counter = surge.figure_counter()
# Load data from output
clawdata = clawpack.clawutil.data.ClawInputData(2)
clawdata.read('claw.data')
physics = clawpack.geoclaw.data.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = clawpack.geoclaw.surge.data.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = clawpack.geoclaw.surge.data.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surge.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2011,8,27,7,30) - datetime.datetime(2011,1,1,0)
landfall = (landfall_dt.days) * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surge.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Limits for plots
full_xlimits = [clawdata.lower[0],clawdata.upper[0]]
full_ylimits = [clawdata.lower[1],clawdata.upper[1]]
full_shrink = 0.8
newyork_xlimits = [-74.5,-71.0]
newyork_ylimits = [40.0,41.5]
newyork_shrink = 0.5
# Color limits
surface_range = 1.5
speed_range = 1.0
# speed_range = 1.e-2
xlimits = full_xlimits
ylimits = full_ylimits
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
speed_limits = [0.0,speed_range]
wind_limits = [0,55]
pressure_limits = [966,1013]
friction_bounds = [0.01,0.04]
vorticity_limits = [-1.e-2,1.e-2]
def pcolor_afteraxes(current_data):
surge_afteraxes(current_data)
surge.gauge_locations(current_data)
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# ========================================================================
# Surface Elevations - Entire Atlantic
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface - Atlantic',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
surge.add_surface_elevation(plotaxes,bounds=surface_limits,shrink=full_shrink)
surge.add_land(plotaxes)
# ========================================================================
# Water Speed - Entire Atlantic
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Currents - Atlantic',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
# Speed
surge.add_speed(plotaxes,bounds=speed_limits,shrink=full_shrink)
# Land
surge.add_land(plotaxes)
# ========================================================================
# Surface Elevations - New York Area
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface - New York',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = newyork_xlimits
plotaxes.ylimits = newyork_ylimits
def after_with_gauges(cd):
surge_afteraxes(cd)
surge.gauge_locations(cd)
plotaxes.afteraxes = after_with_gauges
surge.add_surface_elevation(plotaxes,bounds=surface_limits,shrink=newyork_shrink)
surge.add_land(plotaxes)
# ========================================================================
# Currents Elevations - New York Area
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Currents - New York',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = newyork_xlimits
plotaxes.ylimits = newyork_ylimits
def after_with_gauges(cd):
surge_afteraxes(cd)
surge.gauge_locations(cd)
plotaxes.afteraxes = after_with_gauges
surge.add_speed(plotaxes,bounds=speed_limits,shrink=newyork_shrink)
surge.add_land(plotaxes)
# ========================================================================
# Hurricane forcing - Entire Atlantic
# ========================================================================
# Friction field
plotfigure = plotdata.new_plotfigure(name='Friction',
figno=fig_num_counter.get_counter())
plotfigure.show = friction_data.variable_friction and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Manning's N Coefficients"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_friction(plotaxes,bounds=friction_bounds)
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_pressure(plotaxes,bounds=pressure_limits)
# add_pressure(plotaxes)
surge.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_wind(plotaxes,bounds=wind_limits,plot_type='imshow')
# add_wind(plotaxes,bounds=wind_limits,plot_type='contour')
# add_wind(plotaxes,bounds=wind_limits,plot_type='quiver')
surge.add_land(plotaxes)
# Surge field
plotfigure = plotdata.new_plotfigure(name='Surge Field',
figno=fig_num_counter.get_counter())
plotfigure.show = ((surge_data.wind_forcing or surge_data.pressure_forcing)
and False)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Storm Surge Source Term S"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surge.pressure_field + 1
plotitem.pcolor_cmap = plt.get_cmap('PuBu')
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 1e-3
plotitem.add_colorbar = True
plotitem.colorbar_shrink = 0.5
plotitem.colorbar_label = "Source Strength"
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,0,0]
surge.add_land(plotaxes)
plotfigure = plotdata.new_plotfigure(name='Friction/Coriolis Source',
figno=fig_num_counter.get_counter())
plotfigure.show = False
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Friction/Coriolis Source"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surge.pressure_field + 2
plotitem.pcolor_cmap = plt.get_cmap('PuBu')
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 1e-3
plotitem.add_colorbar = True
plotitem.colorbar_shrink = 0.5
plotitem.colorbar_label = "Source Strength"
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,0,0]
surge.add_land(plotaxes)
# ==========================================================================
# Depth
# ==========================================================================
plotfigure = plotdata.new_plotfigure(name='Depth - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = False
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Topography'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = 0
plotitem.imshow_cmin = 0
plotitem.imshow_cmax = 200
plotitem.imshow_cmap = plt.get_cmap("terrain")
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,1,1,1,1]
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface, Speeds',
figno=fig_num_counter.get_counter(),
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Surface and Topography
plotaxes = plotfigure.new_plotaxes()
# plotaxes.axescmd = 'subplot(121)'
try:
plotaxes.xlimits = [amrdata.t0,amrdata.tfinal]
except:
pass
plotaxes.ylimits = surface_limits
plotaxes.title = 'Surface'
plotaxes.afteraxes = surge.gauge_afteraxes
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# # Speeds
# plotaxes = plotfigure.new_plotaxes()
# plotaxes.axescmd = 'subplot(122)'
# try:
# plotaxes.xlimits = [amrdata.t0,amrdata.tfinal]
# except:
# pass
# plotaxes.ylimits = surface_limits
# plotaxes.title = 'Momenta'
# plotaxes.afteraxes = surge.gauge_afteraxes
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 1
# plotitem.plotstyle = 'r-'
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 2
# plotitem.plotstyle = 'b-'
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
fig_num_counter = surge.figure_counter()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir, 'amr.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surge.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
if storm_num == 1:
# Storm 1
landfall_dt = datetime.datetime(1997, 11, 15, 3) - datetime.datetime(
1997, 1, 1, 0)
elif storm_num == 2:
# Storm 2
landfall_dt = datetime.datetime(2008, 12, 17, 0) - datetime.datetime(
2008, 1, 1, 0)
landfall = (landfall_dt.days) * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surge.surge_afteraxes(
cd, track, landfall, plot_direction=False)
# Color limits
surface_range = 5.0
speed_range = 3.0
eta = physics.sea_level
if not isinstance(eta, list):
eta = [eta]
surface_limits = [-5.0, 5.0]
# surface_contours = numpy.linspace(-surface_range, surface_range,11)
surface_contours = [
-5, -4.5, -4, -3.5, -3, -2.5, -2, -1.5, -1, -0.5, 0.5, 1, 1.5, 2, 2.5,
3, 3.5, 4, 4.5, 5
]
surface_ticks = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4, 5]
surface_labels = [str(value) for value in surface_ticks]
speed_limits = [0.0, speed_range]
speed_contours = numpy.linspace(0.0, speed_range, 13)
speed_ticks = [0, 1, 2, 3]
speed_labels = [str(value) for value in speed_ticks]
# wind_limits = [0,64]
wind_limits = [0, 50]
# wind_limits = [-0.002,0.002]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
# vorticity_limits = [-1.e-2,1.e-2]
# def pcolor_afteraxes(current_data):
# surge_afteraxes(current_data)
# surge.gauge_locations(current_data,gaugenos=[6])
def afteraxes(current_data):
surge_afteraxes(current_data)
def add_custom_colorbar_ticks_to_axes(axes,
item_name,
ticks,
tick_labels=None):
axes.plotitem_dict[item_name].colorbar_ticks = ticks
axes.plotitem_dict[item_name].colorbar_tick_labels = tick_labels
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
regions = {
"Full Domain (Grids)": [[clawdata.lower[0], clawdata.upper[0]],
[clawdata.lower[1], clawdata.upper[1]],
[1, 1, 1, 1, 1, 1, 1]],
"Mumbai Regio (Grids)": [[70, 75], [17, 22], [1, 1, 1, 1, 1, 1, 1]],
"Mumbai (Grids)": [[72.6, 73.15], [18.80, 19.25],
[1, 1, 1, 1, 1, 1, 1]],
"Full Domain (No Grids)": [[clawdata.lower[0], clawdata.upper[0]],
[clawdata.lower[1], clawdata.upper[1]],
[0, 0, 0, 0, 0, 0, 0]],
"Mumbai Region (No Grids)": [[70, 75], [17, 22], [0, 0, 0, 0, 0, 0,
0]],
"Mumbai (No Grids)": [[72.6, 73.15], [18.80, 19.25],
[0, 0, 0, 0, 0, 0, 0]]
}
full_xlimits = regions['Full Domain (Grids)'][0]
full_ylimits = regions['Full Domain (Grids)'][1]
for (name, region_data) in regions.iteritems():
#
# Surface
#
plotfigure = plotdata.new_plotfigure(
name='Surface - %s' % name, figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = region_data[0]
plotaxes.ylimits = region_data[1]
plotaxes.afteraxes = afteraxes
surge.add_surface_elevation(plotaxes,
plot_type='pcolor',
bounds=surface_limits)
# surge.add_surface_elevation(plotaxes, plot_type='contourf',
# contours=surface_contours)
surge.add_land(plotaxes, topo_min=-10.0, topo_max=5.0)
surge.add_bathy_contours(plotaxes)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface',
surface_ticks, surface_labels)
plotaxes.plotitem_dict['land'].amr_patchedges_show = region_data[2]
plotaxes.plotitem_dict['surface'].amr_patchedges_show = region_data[2]
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(
name='Currents - %s' % name, figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = region_data[0]
plotaxes.ylimits = region_data[1]
plotaxes.afteraxes = afteraxes
# Speed
surge.add_speed(plotaxes, plot_type='pcolor', bounds=speed_limits)
# surge.add_speed(plotaxes, plot_type='contourf', contours=speed_contours)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks,
speed_labels)
# Land
surge.add_land(plotaxes, topo_min=-10.0, topo_max=5.0)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = region_data[2]
plotaxes.plotitem_dict['land'].amr_patchedges_show = region_data[2]
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction',
figno=fig_num_counter.get_counter())
plotfigure.show = friction_data.variable_friction and False
def friction_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
plt.title(r"Manning's $n$ Coefficient")
# surge_afteraxes(cd)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surge.add_friction(plotaxes, bounds=friction_bounds)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [
0, 0, 0, 0, 0, 0, 0
]
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
# ==========================
# Hurricane Forcing fields
# ==========================
grids = [[0, 0, 0, 0, 0, 0, 0], [1, 1, 1, 1, 1, 1, 1]]
label = ["(No Grids)", "(Grids)"]
for i in xrange(2):
# Pressure field
plotfigure = plotdata.new_plotfigure(
name='Pressure %s' % label[i], figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = afteraxes
plotaxes.scaled = True
surge.add_pressure(plotaxes, bounds=pressure_limits)
surge.add_land(plotaxes)
plotaxes.plotitem_dict['pressure'].amr_patchedges_show = grids[i]
plotaxes.plotitem_dict['land'].amr_patchedges_show = grids[i]
# Wind field
plotfigure = plotdata.new_plotfigure(
name='Wind Speed %s' % label[i],
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = afteraxes
plotaxes.scaled = True
surge.add_wind(plotaxes, bounds=wind_limits, plot_type='pcolor')
surge.add_land(plotaxes)
plotaxes.plotitem_dict['wind'].amr_patchedges_show = grids[i]
plotaxes.plotitem_dict['land'].amr_patchedges_show = grids[i]
# =====================
# Gauge Location Plot
# =====================
gauge_xlimits = regions["Mumbai (Grids)"][0]
gauge_ylimits = regions["Mumbai (Grids)"][1]
# gauge_location_shrink = 0.75
def gauge_after_axes(cd):
# plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
# import pdb; pdb.set_trace()
surge.gauge_locations(cd, gaugenos=[1, 2, 3])
plt.title("Gauge Locations")
plotfigure = plotdata.new_plotfigure(name='Gauge Locations',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = gauge_xlimits
plotaxes.ylimits = gauge_ylimits
plotaxes.afteraxes = gauge_after_axes
surge.add_surface_elevation(plotaxes,
plot_type='pcolor',
bounds=surface_limits)
# surge.plot.add_surface_elevation(plotaxes, plot_type="contourf")
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks,
surface_labels)
surge.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
# plotaxes.plotitem_dict['surface'].add_colorbar = False
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('gist_yarg')
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [
0, 0, 0, 0, 0, 0, 0
]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0, 0, 0, 0, 0, 0, 0]
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# plotfigure.kwargs['figsize'] = (16,10)
def gauge_after_axes(cd):
if cd.gaugeno in [1, 2, 3]:
axes = plt.gca()
# Add GeoClaw gauge data
geoclaw_gauge = cd.gaugesoln
axes.plot(
seconds2days(geoclaw_gauge.t -
date2seconds(gauge_landfall[1])),
geoclaw_gauge.q[3, :], 'b--')
# Fix up plot
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2, 1])
axes.set_ylim([-1, 5])
axes.set_xticks([-2, -1, 0, 1])
axes.set_xticklabels([r"$-2$", r"$-1$", r"$0$", r"$1$"])
axes.grid(True)
axes.legend()
plt.hold(False)
# surge.gauge_afteraxes(cd)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1, 5]
plotaxes.title = 'Surface'
plotaxes.afteraxes = gauge_after_axes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
if article:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = [54, 60, 66, 72, 78,
84] # list of frames to print
plotdata.print_gaugenos = [1, 2, 3] # list of gauges to print
plotdata.print_fignos = [4, 5, 6, 7, 10, 3,
300] # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
else:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2, 3] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
""""""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# clear any old figures,axes,items data
plotdata.clearfigures()
plotdata.format = 'ascii'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Calculate landfall time
# Landfall for Ike in Houston was September 13th, at 7 UTC
landfall_dt = datetime.datetime(2008, 9, 13, 7) - \
datetime.datetime(2008, 1, 1, 0)
landfall = landfall_dt.days * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
def surge_afteraxes(cd):
surgeplot.surge_afteraxes(cd,
track,
landfall,
plot_direction=False,
kwargs={"markersize": 4})
# Color limits
surface_limits = [physics.sea_level - 5.0, physics.sea_level + 5.0]
surface_ticks = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4, 5]
surface_labels = [str(value) for value in surface_ticks]
speed_limits = [0.0, 3.0]
speed_ticks = [0, 1, 2, 3]
speed_labels = [str(value) for value in speed_ticks]
wind_limits = [0, 64]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
def add_custom_colorbar_ticks_to_axes(axes,
item_name,
ticks,
tick_labels=None):
"""Adjust colorbar ticks and labels"""
axes.plotitem_dict[item_name].colorbar_ticks = ticks
axes.plotitem_dict[item_name].colorbar_tick_labels = tick_labels
def gulf_after_axes(cd):
# plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
surge_afteraxes(cd)
def latex_after_axes(cd):
# plt.subplot_adjust()
surge_afteraxes(cd)
def friction_after_axes(cd):
# plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
plt.title(r"Manning's $n$ Coefficient")
# surge_afteraxes(cd)
# ==========================================================================
# Plot specifications
# ==========================================================================
regions = {
"Gulf": {
"xlimits": (clawdata.lower[0], clawdata.upper[0]),
"ylimits": (clawdata.lower[1], clawdata.upper[1]),
"figsize": (6.4, 4.8)
},
"LaTex Shelf": {
"xlimits": (-97.5, -88.5),
"ylimits": (27.5, 30.5),
"figsize": (8, 2.7)
}
}
for (name, region_dict) in regions.iteritems():
# Surface Figure
plotfigure = plotdata.new_plotfigure(name="Surface - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Surface"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks,
surface_labels)
# Speed Figure
plotfigure = plotdata.new_plotfigure(name="Currents - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Currents"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes, bounds=speed_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks,
speed_labels)
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction')
plotfigure.show = friction_data.variable_friction and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes, bounds=friction_bounds, shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
#
# Hurricane Forcing fields
#
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Gauge Surfaces',
figno=300,
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1, 5]
plotaxes.title = 'Surface'
def gauge_afteraxes(cd):
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes, landfall=landfall)
# Fix up plot - in particular fix time labels
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2, 1])
axes.set_ylim([-1, 5])
axes.set_xticks([-2, -1, 0, 1])
axes.set_xticklabels([r"$-2$", r"$-1$", r"$0$", r"$1$"])
axes.grid(True)
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos='all',
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge Locations")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Locations'
plotaxes.scaled = True
plotaxes.xlimits = [-95.5, -94]
plotaxes.ylimits = [29.0, 30.0]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks,
surface_labels)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2, 3, 4] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # parallel plotting
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
fig_num_counter = surge.figure_counter()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir,'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir,'amr.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surge.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2013,10,5,0) - datetime.datetime(2013,1,1,0)
landfall = (landfall_dt.days - 1.0) * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surge.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Color limits
surface_range = 5.0
speed_range = 3.0
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
# surface_contours = numpy.linspace(-surface_range, surface_range,11)
surface_contours = [-5,-4.5,-4,-3.5,-3,-2.5,-2,-1.5,-1,-0.5,0.5,1,1.5,2,2.5,3,3.5,4,4.5,5]
surface_ticks = [-5,-4,-3,-2,-1,0,1,2,3,4,5]
surface_labels = [str(value) for value in surface_ticks]
speed_limits = [0.0,speed_range]
speed_contours = numpy.linspace(0.0,speed_range,13)
speed_ticks = [0,1,2,3]
speed_labels = [str(value) for value in speed_ticks]
wind_limits = [0,64]
# wind_limits = [-0.002,0.002]
pressure_limits = [935,1013]
friction_bounds = [0.01,0.04]
# vorticity_limits = [-1.e-2,1.e-2]
# def pcolor_afteraxes(current_data):
# surge_afteraxes(current_data)
# surge.gauge_locations(current_data,gaugenos=[6])
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
def add_custom_colorbar_ticks_to_axes(axes, item_name, ticks, tick_labels=None):
axes.plotitem_dict[item_name].colorbar_ticks = ticks
axes.plotitem_dict[item_name].colorbar_tick_labels = tick_labels
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# ========================================================================
# Entire Gulf
# ========================================================================
gulf_xlimits = [clawdata.lower[0],clawdata.upper[0]]
gulf_ylimits = [clawdata.lower[1],clawdata.upper[1]]
gulf_shrink = 0.9
def gulf_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
surge_afteraxes(cd)
#
# Surface
#
plotfigure = plotdata.new_plotfigure(name='Surface - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
surge.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=gulf_shrink)
surge.add_land(plotaxes,topo_min=-10.0,topo_max=5.0)
# surge.add_bathy_contours(plotaxes)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1,1,1,1,1,1,1,1]
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
# Speed
surge.add_speed(plotaxes, plot_type='contourf',
contours=speed_contours,
shrink=gulf_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
# Land
surge.add_land(plotaxes)
surge.add_bathy_contours(plotaxes)
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction',
figno=fig_num_counter.get_counter())
plotfigure.show = friction_data.variable_friction and True
def friction_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
plt.title(r"Manning's $n$ Coefficient")
# surge_afteraxes(cd)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surge.add_friction(plotaxes,bounds=friction_bounds,shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
# ========================================================================
# LaTex Shelf
# ========================================================================
latex_xlimits = [-97.5,-88.5]
latex_ylimits = [27.5,30.5]
latex_shrink = 1.0
def latex_after_axes(cd):
if article:
plt.subplots_adjust(left=0.07, bottom=0.14, right=1.0, top=0.86)
else:
plt.subplots_adjust(right=1.0)
surge_afteraxes(cd)
#
# Surface
#
plotfigure = plotdata.new_plotfigure(name='Surface - LaTex Shelf',
figno=fig_num_counter.get_counter())
plotfigure.show = True
if article:
plotfigure.kwargs = {'figsize':(8,2.7), 'facecolor':'none'}
else:
plotfigure.kwargs = {'figsize':(9,2.7), 'facecolor':'none'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = latex_xlimits
plotaxes.ylimits = latex_ylimits
plotaxes.afteraxes = latex_after_axes
surge.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=latex_shrink)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
# plotaxes.afteraxes = lambda cd: article_latex_after_axes(cd, landfall)
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', [-5,-2.5,0,2.5,5.0],
["-5.0","-2.5"," 0"," 2.5"," 5.0"])
# plotaxes.plotitem_dict['surface'].contour_cmap = plt.get_cmap('OrRd')
# surge.add_surface_elevation(plotaxes,plot_type='contour')
surge.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# Plot using jet and 0.0 to 5.0 to match figgen generated ADCIRC results
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - LaTex Shelf',
figno=fig_num_counter.get_counter())
plotfigure.show = True
if article:
plotfigure.kwargs = {'figsize':(8,2.7), 'facecolor':'none'}
else:
plotfigure.kwargs = {'figsize':(9,2.7), 'facecolor':'none'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = latex_xlimits
plotaxes.ylimits = latex_ylimits
plotaxes.afteraxes = latex_after_axes
surge.add_speed(plotaxes, plot_type='contourf',
contours=speed_contours,
shrink=latex_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
# surge.add_surface_elevation(plotaxes,plot_type='contour')
surge.add_land(plotaxes)
# plotaxes.plotitem_dict['speed'].amr_patchedges_show = [1,1,0,0,0,0,0]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# ==========================
# Hurricane Forcing fields
# ==========================
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
surge.add_pressure(plotaxes, bounds=pressure_limits, shrink=gulf_shrink)
surge.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
surge.add_wind(plotaxes, bounds=wind_limits, plot_type='pcolor',
shrink=gulf_shrink)
surge.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
plotfigure.kwargs['figsize'] = (16,10)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2,1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1,5]
plotaxes.title = 'Surface'
# plotaxes.afteraxes = gauge_after_axes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# =====================
# Gauge Location Plot
# =====================
gauge_xlimits = [-95.5, -94]
gauge_ylimits = [29.0, 30.0]
gauge_location_shrink = 0.75
def gauge_after_axes(cd):
# plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
surge.gauge_locations(cd, gaugenos=[1, 2, 3, 4])
plt.title("Gauge Locations")
plotfigure = plotdata.new_plotfigure(name='Gauge Locations',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = gauge_xlimits
plotaxes.ylimits = gauge_ylimits
plotaxes.afteraxes = gauge_after_axes
surge.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=gauge_location_shrink)
# surge.add_surface_elevation(plotaxes, plot_type="contourf")
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
surge.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
# plotaxes.plotitem_dict['surface'].add_colorbar = False
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('gist_yarg')
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
if article:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = [54,60,66,72,78,84] # list of frames to print
plotdata.print_gaugenos = [1,2,3,4] # list of gauges to print
plotdata.print_fignos = [4,5,6,7,10,3,300] # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
else:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1,2,3,4] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
plotdata.clearfigures()
plotdata.format = 'binary'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Set afteraxes function
def surge_afteraxes(cd):
surgeplot.surge_afteraxes(cd, track, plot_direction=False,
kwargs={"markersize": 4})
def friction_after_axes(cd):
plt.title(r"Manning's $n$ Coefficient")
# Color limits
surface_limits = [-5.0, 5.0]
speed_limits = [0.0, 3.0]
wind_limits = [0, 45]
pressure_limits = [940, 1013]
friction_bounds = [0.01, 0.04]
# ==========================================================================
# Plot specifications
# ==========================================================================
# Specify set of zooms for plotting
regions = {"World": {"xlimits": (clawdata.lower[0], clawdata.upper[0]),
"ylimits": (clawdata.lower[1], clawdata.upper[1]),
"figsize": (6.4 * 2, 4.8)}}
for (name, region_dict) in regions.items():
# Surface Figure
plotfigure = plotdata.new_plotfigure(name="Surface - %s" % name)
if 'figsize' in region_dict.keys():
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes('surface')
plotaxes.title = "Surface"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Speed Figure
plotfigure = plotdata.new_plotfigure(name="Currents - %s" % name)
if 'figsize' in region_dict.keys():
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Currents"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_speed(plotaxes, bounds=speed_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#
# Hurricane Forcing fields
#
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['World']['xlimits']
plotaxes.ylimits = regions['World']['ylimits']
if 'figsize' in regions['World'].keys():
plotfigure.kwargs = {"figsize": regions['World']['figsize']}
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['World']['xlimits']
plotaxes.ylimits = regions['World']['ylimits']
if 'figsize' in regions['World'].keys():
plotfigure.kwargs = {"figsize": regions['World']['figsize']}
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Gauge Surfaces', figno=300,
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1, 5]
plotaxes.title = 'Surface'
def gauge_afteraxes(cd):
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes)
# Fix up plot - in particular fix time labels
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2, 1])
axes.set_ylim([-1, 5])
axes.set_xticks([-2, -1, 0, 1])
axes.set_xticklabels([r"$-2$", r"$-1$", r"$0$", r"$1$"])
axes.grid(True)
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata, gaugenos='all',
format_string='ko', add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge Locations")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Locations'
plotaxes.scaled = True
if 'figsize' in regions['World'].keys():
plotfigure.kwargs = {"figsize": regions['World']['figsize']}
plotaxes.xlimits = regions['World']["xlimits"]
plotaxes.ylimits = regions['World']["ylimits"]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2, 3, 4] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # parallel plotting
return plotdata
def setplot(plotdata=None):
""""""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# clear any old figures,axes,items data
plotdata.clearfigures()
plotdata.format = 'ascii'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Set afteraxes function
def surge_afteraxes(cd):
surgeplot.surge_afteraxes(cd,
track,
plot_direction=False,
kwargs={"markersize": 4})
# Color limits
surface_limits = [-4.0, 4.0]
speed_limits = [0.0, 3.0]
wind_limits = [0, 64]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
'''
surface_limits = [-2.0, 2.0]
speed_limits = [0.0, 3.0]
wind_limits = [0, 70]
pressure_limits = [990, 1010]
friction_bounds = [0.01, 0.04]
'''
def friction_after_axes(cd):
plt.title(r"Manning's $n$ Coefficient")
# ==========================================================================
# Plot specifications
# ==========================================================================
# surface region
regions = {
"Gulf": {
"xlimits": (clawdata.lower[0], clawdata.upper[0]),
"ylimits": (clawdata.lower[1], clawdata.upper[1]),
"figsize": (6.4, 3.2)
},
"LaTex Shelf": {
"xlimits": (-94.5, -86),
"ylimits": (27, 32),
"figsize": (10, 5)
}
}
for (name, region_dict) in regions.items():
# Surface Figure
plotfigure = plotdata.new_plotfigure(name="Surface - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Surface"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Speed Figure
plotfigure = plotdata.new_plotfigure(name="Currents - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Currents"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes, bounds=speed_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction')
plotfigure.show = friction_data.variable_friction and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes, bounds=friction_bounds, shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
#
# Hurricane Forcing fields
#
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['wind'].amr_patchedges_show = [0] * 10 # added
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Gauge Surfaces',
figno=300,
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1.0, 2.5]
plotaxes.title = 'Surface'
def gauge_afteraxes(cd):
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes)
gauge_id = ['8770822', '8768094', '8764227', '8761305', '8760922']
gauge_title = [
'Texas Point, Sabine Pass, TX', 'Calcasieu Pass, LA',
'LAWMA, Amerada Pass, LA', 'Shell Beach, LA',
'Pilots Station East, S.W. Pass, LA'
]
if (cd.gaugeno < 6):
realData = util.fetch_noaa_tide_data(gauge_id[cd.gaugeno - 1],
datetime.datetime(2019,
7,
10,
hour=12),
datetime.datetime(2019,
7,
16,
hour=12),
datum='MLLW')
values = realData[1] - realData[2]
times = []
for time in realData[0]:
times.append(
(time - numpy.datetime64("2019-07-13T15:00")).astype(float)
/ 1440)
plt.plot(times, values, color='orange', label='real')
axes.set_title('Gauge %s: %s' %
(cd.gaugeno,
gauge_title[cd.gaugeno - 1])) # i for i in gauge_title
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2, 1])
axes.set_ylim([-1.0, 2.5])
axes.set_xticks([-2, -1, 0, 1])
axes.set_xticklabels([r"$-2$", r"$-1$", r"$0$", r"$1$"])
axes.grid(True)
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 3
# plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
# All gauges
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos='all',
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge Location")
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Locations'
plotaxes.scaled = True
plotaxes.xlimits = [-95, -88.5]
plotaxes.ylimits = [28, 31]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Gauge 01: Texas Point, Sabine Pass, TX [8770822]
def gauge_location_afteraxes1(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[1],
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge 01")
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 01 Location'
plotaxes.scaled = True
plotaxes.xlimits = [-93.84 - 0.2, -93.84 + 0.2]
plotaxes.ylimits = [29.69 - 0.2, 29.69 + 0.2]
plotaxes.afteraxes = gauge_location_afteraxes1
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Gauge 02: Calcasieu Pass, LA [8768094]
def gauge_location_afteraxes2(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[2],
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge 02")
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 02 Location'
plotaxes.scaled = True
plotaxes.xlimits = [-93.34 - 0.2, -93.34 + 0.2]
plotaxes.ylimits = [29.77 - 0.2, 29.77 + 0.2]
plotaxes.afteraxes = gauge_location_afteraxes2
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Gauge 03: LAWMA, Amerada Pass, LA [8764227]
def gauge_location_afteraxes3(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[3],
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge 03")
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 03 Location'
plotaxes.scaled = True
plotaxes.xlimits = [-91.34 - 0.2, -91.34 + 0.2]
plotaxes.ylimits = [29.45 - 0.2, 29.45 + 0.2]
plotaxes.afteraxes = gauge_location_afteraxes3
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Gauge 04: Shell Beach, LA [8761305]
def gauge_location_afteraxes4(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[4],
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge 04")
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 04 Location'
plotaxes.scaled = True
plotaxes.xlimits = [-89.67 - 0.2, -89.67 + 0.2]
plotaxes.ylimits = [29.87 - 0.2, 29.87 + 0.2]
plotaxes.afteraxes = gauge_location_afteraxes4
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Gauge 05: Pilots Station East, S.W. Pass, LA [8760922]
def gauge_location_afteraxes5(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[5],
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge 05")
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 05 Location'
plotaxes.scaled = True
plotaxes.xlimits = [-89.41 - 0.2, -89.41 + 0.2]
plotaxes.ylimits = [28.93 - 0.2, 28.93 + 0.2]
plotaxes.afteraxes = gauge_location_afteraxes5
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2, 3, 4, 5] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # parallel plotting
return plotdata
def setplot(plotdata=None):
""""""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# clear any old figures,axes,items data
plotdata.clearfigures()
plotdata.format = 'ascii'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Set afteraxes function
def surge_afteraxes(cd):
surgeplot.surge_afteraxes(cd, track, plot_direction=False,
kwargs={"markersize": 4})
# Color limits
surface_limits = [-5.0, 5.0]
speed_limits = [0.0, 3.0]
wind_limits = [0, 64]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
color_limits=[0,50]
def friction_after_axes(cd):
plt.title(r"Manning's $n$ Coefficient")
# ==========================================================================
# Plot specifications
# ==========================================================================
regions = {"Atlantic": {"xlimits": (clawdata.lower[0], clawdata.upper[0]),
"ylimits": (clawdata.lower[1], clawdata.upper[1]),
"figsize": (6.4, 4.8)},
"Atlantic City, NJ": {"xlimits": (-78, -74),
"ylimits": (32,36),
"figsize": (10.5, 11.5)},
"ChesapeakeBay Shelf": {"xlimits": (-77, -75),
"ylimits": (36, 38),
"figsize": (5, 6)},
"Manhattan Shelf": {"xlimits": (-75,-73),
"ylimits": (38,40),
"figsize": (5,6)},
"Sandy Hook, NJ": {"xlimits": (-76,-73),
"ylimits": (38,41),
"figsize":(5,6)},
"New Haven CT": {"xlimits": (-77,-73),
"ylimits": (39,41),
"figsize":(5,6)},
"New London CT": {"xlimits": (-74,-70),
"ylimits": (39,43),
"figsize":(5,6)},
"Boston MA": {"xlimits": (-72,-68),
"ylimits": (40,44),
"figsize":(5,6)}}
for (name, region_dict) in regions.items():
# Surface Figure
plotfigure = plotdata.new_plotfigure(name="Surface - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Surface"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Speed Figure
plotfigure = plotdata.new_plotfigure(name="Currents - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Currents"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes, bounds=speed_limits)
surgeplot.add_land(plotaxes,bounds=color_limits)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction')
plotfigure.show = friction_data.variable_friction and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Atlantic']['xlimits']
plotaxes.ylimits = regions['Atlantic']['ylimits']
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes, bounds=friction_bounds, shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
#
# Hurricane Forcing fields
#
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Atlantic']['xlimits']
plotaxes.ylimits = regions['Atlantic']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Atlantic']['xlimits']
plotaxes.ylimits = regions['Atlantic']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Gauge Surfaces', figno=300,
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-3, 3]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [0,1.5]
plotaxes.title = 'Surface'
#Gauge Data from NOAA
try:
gauges = [np.loadtxt('gauge_data_1.txt'),
np.loadtxt('gauge_data_2.txt'),
np.loadtxt('gauge_data3.txt'),
np.loadtxt('gauge_data_4.txt'),
np.loadtxt('gauge_data_5.txt'),
np.loadtxt('gauge_data_6.txt')]
#Legend with Gauge Locations
data_names = ["Duke Marine Lab, NC Data from NOAA",
"Kiptopeke Beach, NC Data from NOAA",
"Atlantic City, NJ Data from NOAA",
"Sandy Hook, NJ Data from NOAA",
"New London, CT Data from NOAA",
"Boston, MA Data from NOAA"]
except:
print("Add gauge files to directory")
def gauge_afteraxes(cd):
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes)
# Fix up plot - in particular fix time labels
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-3, 3])
axes.set_ylim([0,1.5])
axes.set_xticks([-3, -2, -1, 0, 1, 2, 3])
axes.set_xticklabels([r"$-3$",r"$-2$",r"$-1$", r"$0$", r"$1$", r"$2$", r"$3$"])
axes.grid(True)
try:
gauge_data=gauges[cd.gaugeno-1]
axes.plot(gauge_data[:,0], gauge_data[:,1], label=data_names[cd.gaugeno-1])
axes.legend()
except:
print('Gauge Data Unavailable')
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 3
# plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata, gaugenos='all',
format_string='ko', add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge Locations")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Locations'
plotaxes.scaled = True
plotaxes.xlimits = [-81, -70]
plotaxes.ylimits = [33,45]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#---------------
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2, 3, 4, 5, 6] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # parallel plotting
return plotdata
def setplot(plotdata=None):
""""""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# clear any old figures,axes,items data
plotdata.clearfigures()
plotdata.format = 'binary'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Set afteraxes function
def surge_afteraxes(cd):
surgeplot.surge_afteraxes(cd,
track,
plot_direction=False,
kwargs={"markersize": 4})
# Color limits
surface_range = 5.0
eta = physics.sea_level
if not isinstance(eta, list):
eta = [eta]
surface_limits = [eta[0] - surface_range, eta[0] + surface_range]
speed_limits = [0.0, 3.0]
wind_limits = [0, 64]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
def friction_after_axes(cd):
plt.title(r"Manning's $n$ Coefficient")
# ==========================================================================
# Plot specifications
# ==========================================================================
regions = {
"Entire Region": {
"xlimits": (clawdata.lower[0], clawdata.upper[0]),
"ylimits": (clawdata.lower[1], clawdata.upper[1]),
"figsize": (13, 10)
},
"Caribbean Sub-region": {
"xlimits": (-86, -58.0),
"ylimits": (9, 28),
"figsize": (16, 6)
},
}
for (name, region_dict) in regions.items():
# Surface Figure
plotfigure = plotdata.new_plotfigure(name="Surface - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Surface"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [1] * 10
# Speed Figure
plotfigure = plotdata.new_plotfigure(name="Currents - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Currents"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes, bounds=speed_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction')
plotfigure.show = friction_data.variable_friction and False
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Entire Region']['xlimits']
plotaxes.ylimits = regions['Entire Region']['ylimits']
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes, bounds=friction_bounds, shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
#
# Hurricane Forcing fields
#
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = surge_data.pressure_forcing and False
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Entire Region']['xlimits']
plotaxes.ylimits = regions['Entire Region']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Entire Region']['xlimits']
plotaxes.ylimits = regions['Entire Region']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Gauge Surfaces',
figno=300,
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1, 5]
plotaxes.title = 'Surface'
def gauge_afteraxes(cd):
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes)
# Fix up plot - in particular fix time labels
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2, 1])
axes.set_ylim([-1, 5])
axes.set_xticks([-2, -1, 0, 1])
axes.set_xticklabels([r"$-2$", r"$-1$", r"$0$", r"$1$"])
axes.grid(True)
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 3
# plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos='all',
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge Locations")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Locations'
plotaxes.scaled = True
plotaxes.xlimits = [clawdata.lower[0], clawdata.upper[0]]
plotaxes.ylimits = [clawdata.lower[1], clawdata.upper[1]]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#-----------------------------------------
# Figures for fgmax plots
#-----------------------------------------
from clawpack.geoclaw import fgmax_tools
fgmax_plotdir = '_plots'
os.system('mkdir -p %s' % fgmax_plotdir)
# Read fgmax data:
fgno = 1
while (True):
fg = fgmax_tools.FGmaxGrid()
try:
fg.read_fgmax_grids_data(fgno)
fg.read_output(outdir=plotdata.outdir)
fg.B0 = fg.B # no seafloor deformation in this problem
fg.h_onshore = np.ma.masked_where(fg.B0 < 0., fg.h)
plt.figure(figsize=(20, 20))
pc = plt.pcolormesh(fg.X, fg.Y, fg.h_onshore, cmap='hot_r')
cb = plt.colorbar(pc, extend='max', shrink=0.7)
cb.set_label('meters')
plt.contour(fg.X, fg.Y, fg.B, [0], colors='g')
plt.gca().set_aspect(1. / np.cos(48 * np.pi / 180.))
plt.ticklabel_format(useOffset=False)
plt.xticks(rotation=20)
plt.title('Maximum Onshore flow depth\nfgmax grid {fgno}')
img_name = f'fgmax{str(fgno).zfill(4)}_h_onshore.png'
plt.savefig(fname=f'{fgmax_plotdir}/{img_name}')
otherfigure = plotdata.new_otherfigure(
name=f'max depth on fgmax grid {fgno}', fname=img_name)
fgno = fgno + 1
except:
break
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # parallel plotting
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
# Load data from output
clawdata = clawpack.clawutil.data.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir,'claw.data'))
physics = clawpack.geoclaw.data.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = clawpack.geoclaw.data.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = clawpack.geoclaw.data.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track32
track = surge.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Set afteraxes function
def surge_afteraxes(cd):
return surge.surge_afteraxes(cd, track, plot_direction=False)
# Limits for plots
dx = 0.5
dy = 0.5
regions = [{"name": "Full Domain",
"limits": [[clawdata.lower[0], clawdata.upper[0]],
[clawdata.lower[1], clawdata.upper[1]]]},
{"name": "New Orleans",
"limits": [[-92.5, -87.5], [27.5, 31.5]]},
{"name": "Grand Isle",
"limits": [[-89.41 - dx, -89.41 + dx],
[29.26 - dx, 29.26 + dx]]},
{"name": "Pilots Station East",
"limits": [[-89.41 - dx, -89.41 + dx],
[28.93 - dy, 28.93 + dy]]},
{"name": "Dauphin Island",
"limits": [[-88.08 - dx, -88.08 + dx],
[30.25 - dy, 30.25 + dy]]}]
# Color limits
surface_limits = [physics.sea_level - 5.0, physics.sea_level + 5.0]
surface_ticks = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4, 5]
surface_labels = [str(value) for value in surface_ticks]
speed_limits = [0.0, 3.0]
speed_ticks = [0, 1, 2, 3]
speed_labels = [str(value) for value in speed_ticks]
wind_limits = [15, 40]
pressure_limits = [966,1013]
friction_bounds = [0.01,0.04]
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# Loop over region specifications ploting both surface and speeds
for region in regions:
name = region['name']
xlimits = region['limits'][0]
ylimits = region['limits'][1]
# ======================================================================
# Surface Elevations
# ======================================================================
plotfigure = plotdata.new_plotfigure(name='Surface - %s' % name)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
surge.add_surface_elevation(plotaxes, bounds=surface_limits)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
surge.add_land(plotaxes)
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# ======================================================================
# Water Speed
# ======================================================================
plotfigure = plotdata.new_plotfigure(name='Currents - %s' % name)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
surge.add_speed(plotaxes, bounds=speed_limits)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
surge.add_land(plotaxes)
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# ======================================================================
# Wind Field
# ======================================================================
plotfigure = plotdata.new_plotfigure(name='Wind Speed - %s' % name)
plotfigure.show = surge_data.wind_forcing
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Wind Field"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
surge.add_wind(plotaxes, bounds=wind_limits)
plotaxes.plotitem_dict['wind'].amr_patchedges_show = [0] * 10
surge.add_land(plotaxes)
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# ========================================================================
# Hurricane forcing
# ========================================================================
# Friction field
plotfigure = plotdata.new_plotfigure(name='Friction - %s' % name)
plotfigure.show = friction_data.variable_friction
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Manning's N Coefficients"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
surge.add_friction(plotaxes, bounds=friction_bounds)
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure - %s' % name)
plotfigure.show = surge_data.pressure_forcing
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Pressure Field"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
surge.add_pressure(plotaxes, bounds=pressure_limits)
plotaxes.plotitem_dict['pressure'].amr_patchedges_show = [0] * 10
surge.add_land(plotaxes)
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & Topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
stations = [('8761724', 'Grand Isle, LA'),
('8760922', 'Pilots Station East, SW Pass, LA'),
('8735180', 'Dauphin Island, AL')]
landfall_time = np.datetime64('2005-08-29T11:10')
begin_date = datetime.datetime(2005, 8, 26)
end_date = datetime.datetime(2005, 8, 31)
def get_actual_water_levels(station_id):
# Fetch water levels and tide predictions for given station
date_time, water_level, tide = fetch_noaa_tide_data(station_id,
begin_date, end_date)
# Calculate times relative to landfall
secs_rel_landfall = (date_time - landfall_time) / np.timedelta64(1, 's')
# Subtract tide predictions from measured water levels
water_level -= tide
return secs_rel_landfall, water_level
def gauge_afteraxes(cd):
station_id, station_name = stations[cd.gaugeno - 1]
secs_rel_landfall, actual_level = get_actual_water_levels(station_id)
axes = plt.gca()
axes.plot(secs_rel_landfall, actual_level, 'g')
# Fix up plot - in particular fix time labels
axes.set_title(station_name)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim(np.array([-3, 1]) * 86400)
axes.set_ylim([-0.5, 2.5])
axes.set_xticks(np.linspace(-3, 1, 5) * 86400)
axes.set_xticklabels([r"$-3$", r"$-2$", r"$-1$", r"$0$", r"$1$"])
axes.grid(True)
# Plot wind speed using second scale
wind_speed = np.linalg.norm(cd.gaugesoln.q[8:10, :], axis=0)
axes2 = axes.twinx()
axes2.plot(cd.gaugesoln.t, wind_speed, 'r.', markersize=0.3)
axes2.set_ylabel('Wind Speed (m/s)')
axes2.set_ylim([-2.5, 52.5])
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata, gaugenos='all',
format_string='ko', add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge Locations")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Locations'
plotaxes.scaled = True
plotaxes.xlimits = [-91.5, -87.5]
plotaxes.ylimits = [28.0, 31.0]
plotaxes.afteraxes = gauge_location_afteraxes
surge.add_surface_elevation(plotaxes, bounds=surface_limits)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
surge.add_land(plotaxes)
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
# Load data from output
clawdata = clawpack.clawutil.data.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = clawpack.geoclaw.data.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = clawpack.geoclaw.data.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = clawpack.geoclaw.data.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track32
track = surge.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Set afteraxes function
def surge_afteraxes(cd):
return surge.surge_afteraxes(cd, track, plot_direction=False)
# Limits for plots
dx = 0.5
dy = 0.5
regions = [{
"name":
"Full Domain",
"limits": [[clawdata.lower[0], clawdata.upper[0]],
[clawdata.lower[1], clawdata.upper[1]]]
}, {
"name": "New Orleans",
"limits": [[-92.5, -87.5], [27.5, 31.5]]
}, {
"name": "Grand Isle",
"limits": [[-89.41 - dx, -89.41 + dx], [29.26 - dx, 29.26 + dx]]
}, {
"name": "Pilots Station East",
"limits": [[-89.41 - dx, -89.41 + dx], [28.93 - dy, 28.93 + dy]]
}, {
"name": "Dauphin Island",
"limits": [[-88.08 - dx, -88.08 + dx], [30.25 - dy, 30.25 + dy]]
}]
# Color limits
surface_limits = [physics.sea_level - 5.0, physics.sea_level + 5.0]
surface_ticks = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4, 5]
surface_labels = [str(value) for value in surface_ticks]
speed_limits = [0.0, 3.0]
speed_ticks = [0, 1, 2, 3]
speed_labels = [str(value) for value in speed_ticks]
wind_limits = [15, 40]
pressure_limits = [966, 1013]
friction_bounds = [0.01, 0.04]
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# Loop over region specifications ploting both surface and speeds
for region in regions:
name = region['name']
xlimits = region['limits'][0]
ylimits = region['limits'][1]
# ======================================================================
# Surface Elevations
# ======================================================================
plotfigure = plotdata.new_plotfigure(name='Surface - %s' % name)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
surge.add_surface_elevation(plotaxes, bounds=surface_limits)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
surge.add_land(plotaxes)
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# ======================================================================
# Water Speed
# ======================================================================
plotfigure = plotdata.new_plotfigure(name='Currents - %s' % name)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
surge.add_speed(plotaxes, bounds=speed_limits)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
surge.add_land(plotaxes)
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# ======================================================================
# Wind Field
# ======================================================================
plotfigure = plotdata.new_plotfigure(name='Wind Speed - %s' % name)
plotfigure.show = surge_data.wind_forcing
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Wind Field"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
surge.add_wind(plotaxes, bounds=wind_limits)
plotaxes.plotitem_dict['wind'].amr_patchedges_show = [0] * 10
surge.add_land(plotaxes)
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# ========================================================================
# Hurricane forcing
# ========================================================================
# Friction field
plotfigure = plotdata.new_plotfigure(name='Friction - %s' % name)
plotfigure.show = friction_data.variable_friction
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Manning's N Coefficients"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
surge.add_friction(plotaxes, bounds=friction_bounds)
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure - %s' % name)
plotfigure.show = surge_data.pressure_forcing
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Pressure Field"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
surge.add_pressure(plotaxes, bounds=pressure_limits)
plotaxes.plotitem_dict['pressure'].amr_patchedges_show = [0] * 10
surge.add_land(plotaxes)
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & Topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
stations = [('8761724', 'Grand Isle, LA'),
('8760922', 'Pilots Station East, SW Pass, LA'),
('8735180', 'Dauphin Island, AL')]
landfall_time = np.datetime64('2005-08-29T11:10')
begin_date = datetime.datetime(2005, 8, 26)
end_date = datetime.datetime(2005, 8, 31)
def get_actual_water_levels(station_id):
# Fetch water levels and tide predictions for given station
date_time, water_level, tide = fetch_noaa_tide_data(
station_id, begin_date, end_date)
# Calculate times relative to landfall
secs_rel_landfall = (date_time - landfall_time) / np.timedelta64(
1, 's')
# Subtract tide predictions from measured water levels
water_level -= tide
return secs_rel_landfall, water_level
def gauge_afteraxes(cd):
station_id, station_name = stations[cd.gaugeno - 1]
secs_rel_landfall, actual_level = get_actual_water_levels(station_id)
axes = plt.gca()
axes.plot(secs_rel_landfall, actual_level, 'g')
# Fix up plot - in particular fix time labels
axes.set_title(station_name)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim(np.array([-3, 1]) * 86400)
axes.set_ylim([-0.5, 2.5])
axes.set_xticks(np.linspace(-3, 1, 5) * 86400)
axes.set_xticklabels([r"$-3$", r"$-2$", r"$-1$", r"$0$", r"$1$"])
axes.grid(True)
# Plot wind speed using second scale
wind_speed = np.linalg.norm(cd.gaugesoln.q[8:10, :], axis=0)
axes2 = axes.twinx()
axes2.plot(cd.gaugesoln.t, wind_speed, 'r.', markersize=0.3)
axes2.set_ylabel('Wind Speed (m/s)')
axes2.set_ylim([-2.5, 52.5])
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos='all',
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge Locations")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Locations'
plotaxes.scaled = True
plotaxes.xlimits = [-91.5, -87.5]
plotaxes.ylimits = [28.0, 31.0]
plotaxes.afteraxes = gauge_location_afteraxes
surge.add_surface_elevation(plotaxes, bounds=surface_limits)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
surge.add_land(plotaxes)
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
fig_num_counter = surge.figure_counter()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir,'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir,'amr.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surge.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
if storm_num == 1:
# Storm 1
landfall_dt = datetime.datetime(1997, 11, 15, 3) - datetime.datetime(1997, 1, 1, 0)
elif storm_num == 2:
# Storm 2
landfall_dt = datetime.datetime(2008, 12, 17, 0) - datetime.datetime(2008, 1, 1, 0)
landfall = (landfall_dt.days) * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surge.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Color limits
surface_range = 5.0
speed_range = 3.0
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [-5.0, 5.0]
# surface_contours = numpy.linspace(-surface_range, surface_range,11)
surface_contours = [-5,-4.5,-4,-3.5,-3,-2.5,-2,-1.5,-1,-0.5,0.5,1,1.5,2,2.5,3,3.5,4,4.5,5]
surface_ticks = [-5,-4,-3,-2,-1,0,1,2,3,4,5]
surface_labels = [str(value) for value in surface_ticks]
speed_limits = [0.0,speed_range]
speed_contours = numpy.linspace(0.0,speed_range,13)
speed_ticks = [0,1,2,3]
speed_labels = [str(value) for value in speed_ticks]
# wind_limits = [0,64]
wind_limits = [0,50]
# wind_limits = [-0.002,0.002]
pressure_limits = [935,1013]
friction_bounds = [0.01,0.04]
# vorticity_limits = [-1.e-2,1.e-2]
# def pcolor_afteraxes(current_data):
# surge_afteraxes(current_data)
# surge.gauge_locations(current_data,gaugenos=[6])
def afteraxes(current_data):
surge_afteraxes(current_data)
def add_custom_colorbar_ticks_to_axes(axes, item_name, ticks, tick_labels=None):
axes.plotitem_dict[item_name].colorbar_ticks = ticks
axes.plotitem_dict[item_name].colorbar_tick_labels = tick_labels
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
regions = {"Full Domain (Grids)": [[clawdata.lower[0], clawdata.upper[0]],
[clawdata.lower[1], clawdata.upper[1]],
[1, 1, 1, 1, 1, 1, 1]],
"Mumbai Regio (Grids)": [[70, 75], [17, 22], [1, 1, 1, 1, 1, 1, 1]],
"Mumbai (Grids)": [[72.6, 73.15], [18.80, 19.25], [1, 1, 1, 1, 1, 1, 1]],
"Full Domain (No Grids)": [[clawdata.lower[0], clawdata.upper[0]],
[clawdata.lower[1], clawdata.upper[1]],
[0, 0, 0, 0, 0, 0, 0]],
"Mumbai Region (No Grids)": [[70, 75], [17, 22], [0, 0, 0, 0, 0, 0, 0]],
"Mumbai (No Grids)": [[72.6, 73.15], [18.80, 19.25], [0, 0, 0, 0, 0, 0, 0]]}
full_xlimits = regions['Full Domain (Grids)'][0]
full_ylimits = regions['Full Domain (Grids)'][1]
for (name, region_data) in regions.iteritems():
#
# Surface
#
plotfigure = plotdata.new_plotfigure(name='Surface - %s' % name,
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = region_data[0]
plotaxes.ylimits = region_data[1]
plotaxes.afteraxes = afteraxes
surge.add_surface_elevation(plotaxes, plot_type='pcolor',
bounds=surface_limits)
# surge.add_surface_elevation(plotaxes, plot_type='contourf',
# contours=surface_contours)
surge.add_land(plotaxes,topo_min=-10.0,topo_max=5.0)
surge.add_bathy_contours(plotaxes)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
plotaxes.plotitem_dict['land'].amr_patchedges_show = region_data[2]
plotaxes.plotitem_dict['surface'].amr_patchedges_show = region_data[2]
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - %s' % name,
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = region_data[0]
plotaxes.ylimits = region_data[1]
plotaxes.afteraxes = afteraxes
# Speed
surge.add_speed(plotaxes, plot_type='pcolor', bounds=speed_limits)
# surge.add_speed(plotaxes, plot_type='contourf', contours=speed_contours)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
# Land
surge.add_land(plotaxes,topo_min=-10.0,topo_max=5.0)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = region_data[2]
plotaxes.plotitem_dict['land'].amr_patchedges_show = region_data[2]
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction',
figno=fig_num_counter.get_counter())
plotfigure.show = friction_data.variable_friction and False
def friction_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
plt.title(r"Manning's $n$ Coefficient")
# surge_afteraxes(cd)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surge.add_friction(plotaxes, bounds=friction_bounds)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
# ==========================
# Hurricane Forcing fields
# ==========================
grids = [[0, 0, 0, 0, 0, 0, 0], [1, 1, 1, 1, 1, 1, 1]]
label = ["(No Grids)", "(Grids)"]
for i in xrange(2):
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure %s' % label[i],
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = afteraxes
plotaxes.scaled = True
surge.add_pressure(plotaxes, bounds=pressure_limits)
surge.add_land(plotaxes)
plotaxes.plotitem_dict['pressure'].amr_patchedges_show = grids[i]
plotaxes.plotitem_dict['land'].amr_patchedges_show = grids[i]
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed %s' % label[i],
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = afteraxes
plotaxes.scaled = True
surge.add_wind(plotaxes, bounds=wind_limits, plot_type='pcolor')
surge.add_land(plotaxes)
plotaxes.plotitem_dict['wind'].amr_patchedges_show = grids[i]
plotaxes.plotitem_dict['land'].amr_patchedges_show = grids[i]
# =====================
# Gauge Location Plot
# =====================
gauge_xlimits = regions["Mumbai (Grids)"][0]
gauge_ylimits = regions["Mumbai (Grids)"][1]
# gauge_location_shrink = 0.75
def gauge_after_axes(cd):
# plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
# import pdb; pdb.set_trace()
surge.gauge_locations(cd, gaugenos=[1, 2, 3])
plt.title("Gauge Locations")
plotfigure = plotdata.new_plotfigure(name='Gauge Locations',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = gauge_xlimits
plotaxes.ylimits = gauge_ylimits
plotaxes.afteraxes = gauge_after_axes
surge.add_surface_elevation(plotaxes, plot_type='pcolor',
bounds=surface_limits)
# surge.plot.add_surface_elevation(plotaxes, plot_type="contourf")
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
surge.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
# plotaxes.plotitem_dict['surface'].add_colorbar = False
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('gist_yarg')
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# plotfigure.kwargs['figsize'] = (16,10)
def gauge_after_axes(cd):
if cd.gaugeno in [1, 2, 3]:
axes = plt.gca()
# Add GeoClaw gauge data
geoclaw_gauge = cd.gaugesoln
axes.plot(seconds2days(geoclaw_gauge.t - date2seconds(gauge_landfall[1])),
geoclaw_gauge.q[3,:], 'b--')
# Fix up plot
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2,1])
axes.set_ylim([-1,5])
axes.set_xticks([-2,-1,0,1])
axes.set_xticklabels([r"$-2$",r"$-1$",r"$0$",r"$1$"])
axes.grid(True)
axes.legend()
plt.hold(False)
# surge.gauge_afteraxes(cd)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2,1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1,5]
plotaxes.title = 'Surface'
plotaxes.afteraxes = gauge_after_axes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
if article:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = [54,60,66,72,78,84] # list of frames to print
plotdata.print_gaugenos = [1,2,3] # list of gauges to print
plotdata.print_fignos = [4,5,6,7,10,3,300] # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
else:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1,2,3] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
fig_num_counter = surge.figure_counter()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir,'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir,'amr.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
# Load storm track
track = surge.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2016,6,20-1,0) - datetime.datetime(2016,1,1,0)
landfall = (landfall_dt.days - 1.0) * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surge.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Color limits
surface_range = 5.0
speed_range = 3.0
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
# surface_contours = numpy.linspace(-surface_range, surface_range,11)
surface_contours = [-5,-4.5,-4,-3.5,-3,-2.5,-2,-1.5,-1,-0.5,0.5,1,1.5,2,2.5,3,3.5,4,4.5,5]
surface_ticks = [-5,-4,-3,-2,-1,0,1,2,3,4,5]
surface_labels = [str(value) for value in surface_ticks]
speed_limits = [0.0,speed_range]
speed_contours = numpy.linspace(0.0,speed_range,13)
speed_ticks = [0,1,2,3]
speed_labels = [str(value) for value in speed_ticks]
wind_limits = [0,64]
# wind_limits = [-0.002,0.002]
pressure_limits = [935,1013]
# vorticity_limits = [-1.e-2,1.e-2]
# def pcolor_afteraxes(current_data):
# surge_afteraxes(current_data)
# surge.gauge_locations(current_data,gaugenos=[6])
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
def add_custom_colorbar_ticks_to_axes(axes, item_name, ticks, tick_labels=None):
axes.plotitem_dict[item_name].colorbar_ticks = ticks
axes.plotitem_dict[item_name].colorbar_tick_labels = tick_labels
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# ========================================================================
# Entire Domain
# ========================================================================
entire_domain_xlimits = [clawdata.lower[0],clawdata.upper[0]]
entire_domain_ylimits = [clawdata.lower[1],clawdata.upper[1]]
entire_domain_shrink = 0.9
def entire_domain_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
surge_afteraxes(cd)
#
# Surface
#
plotfigure = plotdata.new_plotfigure(name='Surface - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = entire_domain_xlimits
plotaxes.ylimits = entire_domain_ylimits
plotaxes.afteraxes = entire_domain_after_axes
surge.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=entire_domain_shrink)
surge.add_land(plotaxes,topo_min=-10.0,topo_max=5.0)
# surge.add_bathy_contours(plotaxes)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1,1,1,1,1,1,1,1]
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = entire_domain_xlimits
plotaxes.ylimits = entire_domain_ylimits
plotaxes.afteraxes = entire_domain_after_axes
# Speed
surge.add_speed(plotaxes, plot_type='contourf',
contours=speed_contours,
shrink=entire_domain_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
# Land
surge.add_land(plotaxes)
surge.add_bathy_contours(plotaxes)
# ==========================
# Hurricane Forcing fields
# ==========================
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = entire_domain_xlimits
plotaxes.ylimits = entire_domain_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = entire_domain_after_axes
plotaxes.scaled = True
surge.add_pressure(plotaxes, bounds=pressure_limits, shrink=entire_domain_shrink)
surge.add_land(plotaxes)
plotaxes.plotitem_dict['pressure'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = entire_domain_xlimits
plotaxes.ylimits = entire_domain_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = entire_domain_after_axes
plotaxes.scaled = True
surge.add_wind(plotaxes, bounds=wind_limits, plot_type='pcolor',
shrink=entire_domain_shrink)
surge.add_land(plotaxes)
# plotaxes.plotitem_dict['wind'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
if article:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = [54,60,66,72,78,84] # list of frames to print
plotdata.print_gaugenos = [] # list of gauges to print
plotdata.print_fignos = [4,5,6,7,10,3,300] # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
else:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
fig_num_counter = surge.figure_counter()
# Load data from output
clawdata = clawpack.clawutil.data.ClawInputData(2)
clawdata.read('claw.data')
physics = clawpack.geoclaw.data.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = clawpack.geoclaw.data.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = clawpack.geoclaw.data.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surge.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2012,10,29,8,0) - datetime.datetime(2012,1,1,0)
landfall = (landfall_dt.days) * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surge.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Limits for plots
region_data = {'full':([clawdata.lower[0],clawdata.upper[0]],
[clawdata.lower[1],clawdata.upper[1]],
0.8),
'Region':([-74.5,-71.0], [40.0,41.5], 0.5),
'NYC':([-74.2,-73.8], [40.55,40.85], 0.5)
}
# Color limits
surface_range = 1.5
speed_range = 1.0
# speed_range = 1.e-2
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
speed_limits = [0.0,speed_range]
wind_limits = [0,55]
pressure_limits = [966,1013]
friction_bounds = [0.01,0.04]
vorticity_limits = [-1.e-2,1.e-2]
def pcolor_afteraxes(current_data):
surge_afteraxes(current_data)
surge.gauge_locations(current_data)
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
for (region, values) in region_data.iteritems():
# ========================================================================
# Surface Elevations
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface - %s' % region,
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = values[0]
plotaxes.ylimits = values[1]
plotaxes.afteraxes = pcolor_afteraxes
surge.add_surface_elevation(plotaxes,bounds=surface_limits,shrink=values[2])
surge.add_land(plotaxes)
# ========================================================================
# Water Speed
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Currents - %s' % region,
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = values[0]
plotaxes.ylimits = values[1]
plotaxes.afteraxes = pcolor_afteraxes
# Speed
surge.add_speed(plotaxes,bounds=speed_limits,shrink=values[2])
# Land
surge.add_land(plotaxes)
# ========================================================================
# Hurricane forcing - Entire Atlantic
# ========================================================================
# Friction field
plotfigure = plotdata.new_plotfigure(name='Friction',
figno=fig_num_counter.get_counter())
plotfigure.show = friction_data.variable_friction and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = region_data['full'][0]
plotaxes.ylimits = region_data['full'][1]
plotaxes.title = "Manning's N Coefficients"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_friction(plotaxes,bounds=friction_bounds)
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = region_data['full'][0]
plotaxes.ylimits = region_data['full'][1]
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_pressure(plotaxes,bounds=pressure_limits)
# add_pressure(plotaxes)
surge.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = region_data['full'][0]
plotaxes.ylimits = region_data['full'][1]
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_wind(plotaxes,bounds=wind_limits,plot_type='imshow')
# add_wind(plotaxes,bounds=wind_limits,plot_type='contour')
# add_wind(plotaxes,bounds=wind_limits,plot_type='quiver')
surge.add_land(plotaxes)
# ==========================================================================
# Depth
# ==========================================================================
plotfigure = plotdata.new_plotfigure(name='Depth - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = False
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Topography'
plotaxes.scaled = True
plotaxes.xlimits = region_data['full'][0]
plotaxes.ylimits = region_data['full'][1]
plotaxes.afteraxes = surge_afteraxes
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = 0
plotitem.imshow_cmin = 0
plotitem.imshow_cmax = 200
plotitem.imshow_cmap = plt.get_cmap("terrain")
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,1,1,1,1]
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface, Speeds',
figno=fig_num_counter.get_counter(),
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Surface and Topography
plotaxes = plotfigure.new_plotaxes()
# plotaxes.axescmd = 'subplot(121)'
try:
plotaxes.xlimits = [amrdata.t0,amrdata.tfinal]
except:
pass
plotaxes.ylimits = surface_limits
plotaxes.title = 'Surface'
plotaxes.afteraxes = surge.gauge_afteraxes
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# # Speeds
# plotaxes = plotfigure.new_plotaxes()
# plotaxes.axescmd = 'subplot(122)'
# try:
# plotaxes.xlimits = [amrdata.t0,amrdata.tfinal]
# except:
# pass
# plotaxes.ylimits = surface_limits
# plotaxes.title = 'Momenta'
# plotaxes.afteraxes = surge.gauge_afteraxes
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 1
# plotitem.plotstyle = 'r-'
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 2
# plotitem.plotstyle = 'b-'
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
#fig_num_counter = surge.figure_counter()
# Load data from output
clawdata = clawpack.clawutil.data.ClawInputData(2)
clawdata.read('claw.data')
physics = clawpack.geoclaw.data.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = clawpack.geoclaw.data.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = clawpack.geoclaw.data.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surge.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2011,8,27,7,30) - datetime.datetime(2011,1,1,0)
landfall = (landfall_dt.days) * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surge.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Limits for plots
full_xlimits = [clawdata.lower[0],clawdata.upper[0]]
full_ylimits = [clawdata.lower[1],clawdata.upper[1]]
full_shrink = 0.8
newyork_xlimits = [-74.2,-73.7]
newyork_ylimits = [40.4,40.85]
newyork_shrink = 1.0
# Color limits
surface_range = 1.5
speed_range = 1.0
# speed_range = 1.e-2
xlimits = full_xlimits
ylimits = full_ylimits
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
speed_limits = [0.0,speed_range]
wind_limits = [0,55]
pressure_limits = [966,1013]
friction_bounds = [0.01,0.04]
vorticity_limits = [-1.e-2,1.e-2]
def pcolor_afteraxes(current_data):
surge_afteraxes(current_data)
surge.gauge_locations(current_data)
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# ========================================================================
# Surface Elevations - Entire Atlantic
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface - Atlantic',
figno=100)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
surge.add_surface_elevation(plotaxes,bounds=surface_limits,shrink=full_shrink)
surge.add_land(plotaxes)
# ========================================================================
# Water Speed - Entire Atlantic
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Currents - Atlantic',
figno=200)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
# Speed
surge.add_speed(plotaxes,bounds=speed_limits,shrink=full_shrink)
# Land
surge.add_land(plotaxes)
# ========================================================================
# Surface Elevations - New York Area
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface - New York',
figno=300)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = newyork_xlimits
plotaxes.ylimits = newyork_ylimits
def after_with_gauges(cd):
surge_afteraxes(cd)
surge.gauge_locations(cd)
plotaxes.afteraxes = after_with_gauges
surge.add_surface_elevation(plotaxes,bounds=surface_limits,shrink=newyork_shrink)
surge.add_land(plotaxes)
# ========================================================================
# Currents Elevations - New York Area
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Currents - New York',
figno=400)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = newyork_xlimits
plotaxes.ylimits = newyork_ylimits
def after_with_gauges(cd):
surge_afteraxes(cd)
surge.gauge_locations(cd)
plotaxes.afteraxes = after_with_gauges
surge.add_speed(plotaxes,bounds=speed_limits,shrink=newyork_shrink)
surge.add_land(plotaxes)
# ========================================================================
# Hurricane forcing - Entire Atlantic
# ========================================================================
# Friction field
plotfigure = plotdata.new_plotfigure(name='Friction',
figno=500)
plotfigure.show = friction_data.variable_friction and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Manning's N Coefficients"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_friction(plotaxes,bounds=friction_bounds)
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure',
figno=600)
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_pressure(plotaxes,bounds=pressure_limits)
# add_pressure(plotaxes)
surge.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',
figno=700)
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surge.add_wind(plotaxes,bounds=wind_limits,plot_type='imshow')
# add_wind(plotaxes,bounds=wind_limits,plot_type='contour')
# add_wind(plotaxes,bounds=wind_limits,plot_type='quiver')
surge.add_land(plotaxes)
# Surge field
plotfigure = plotdata.new_plotfigure(name='Surge Field',
figno=800)
plotfigure.show = ((surge_data.wind_forcing or surge_data.pressure_forcing)
and False)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Storm Surge Source Term S"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surge.pressure_field + 1
plotitem.pcolor_cmap = plt.get_cmap('PuBu')
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 1e-3
plotitem.add_colorbar = True
plotitem.colorbar_shrink = 0.5
plotitem.colorbar_label = "Source Strength"
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,0,0]
surge.add_land(plotaxes)
plotfigure = plotdata.new_plotfigure(name='Friction/Coriolis Source',
figno=900)
plotfigure.show = False
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Friction/Coriolis Source"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surge.pressure_field + 2
plotitem.pcolor_cmap = plt.get_cmap('PuBu')
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 1e-3
plotitem.add_colorbar = True
plotitem.colorbar_shrink = 0.5
plotitem.colorbar_label = "Source Strength"
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,0,0]
surge.add_land(plotaxes)
# ==========================================================================
# Depth
# ==========================================================================
plotfigure = plotdata.new_plotfigure(name='Depth - Entire Domain',
figno=1000)
plotfigure.show = False
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Topography'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = surge_afteraxes
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = 0
plotitem.imshow_cmin = 0
plotitem.imshow_cmax = 200
plotitem.imshow_cmap = plt.get_cmap("terrain")
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,1,1,1,1]
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface',
figno=250,type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
stations = [('8518750', 'The Battery, NY'),
('8516945', 'Kings Point, NY'),
('8519483', 'Bergen Point West Reach, NY')]
#('8531680','Sandy Hook, NY'),
#('n03020','Narrows,NY')]
landfall_time = np.datetime64('2011-08-27T11:30')
begin_date = datetime.datetime(2011, 8, 24 )
end_date = datetime.datetime(2011, 8, 28)
# need to uncomment this function if you want to compare with real data from NOAA
# def get_actual_water_levels(station_id):
# # Fetch water levels and tide predictions for given station
# date_time, water_level, tide = fetch_noaa_tide_data(station_id,
# begin_date, end_date)
# Calculate times relative to landfall
# seconds_rel_landfall = (date_time - landfall_time) / np.timedelta64(1, 's')
# Subtract tide predictions from measured water levels
# water_level -= tide
# return seconds_rel_landfall, water_level
def gauge_afteraxes(cd):
station_id, station_name = stations[cd.gaugeno-1]
# uncomment the next line to plot against real NOAA data
# seconds_rel_landfall, actual_level = get_actual_water_levels(station_id)
axes = plt.gca()
#surgeplot.plot_landfall_gauge(cd.gaugesoln, axes, landfall=landfall)
# uncomment the next line to plot against real NOAA data
# axes.plot(seconds_rel_landfall, actual_level, 'g')
# Fix up plot - in particular fix time labels
axes.set_title(station_name)
axes.set_xlabel('Seconds relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_ylim([0, 4])
# axes.set_xticks([ days2seconds(-2), days2seconds(-1), 0, days2seconds(1)])
#axes.set_xticklabels([r"$-3$", r"$-2$", r"$-1$", r"$0$", r"$1$"])
#axes.grid(True)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
try:
plotaxes.xlimits = [amrdata.t0,amrdata.tfinal]
except:
pass
plotaxes.ylimits = surface_limits
plotaxes.title = 'Surface'
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# # Speeds
# plotaxes = plotfigure.new_plotaxes()
# plotaxes.axescmd = 'subplot(122)'
# try:
# plotaxes.xlimits = [amrdata.t0,amrdata.tfinal]
# except:
# pass
# plotaxes.ylimits = surface_limits
# plotaxes.title = 'Momenta'
# plotaxes.afteraxes = surge.gauge_afteraxes
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 1
# plotitem.plotstyle = 'r-'
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 2
# plotitem.plotstyle = 'b-'
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
fig_num_counter = surgeplot.figure_counter()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir,'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir,'amr.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = surgedata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = surgedata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2008,9,13,7) - datetime.datetime(2008,1,1,0)
landfall = (landfall_dt.days - 1.0) * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surgeplot.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Color limits
surface_range = 5.0
speed_range = 3.0
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
# surface_contours = numpy.linspace(-surface_range, surface_range,11)
surface_contours = [-5,-4.5,-4,-3.5,-3,-2.5,-2,-1.5,-1,-0.5,0.5,1,1.5,2,2.5,3,3.5,4,4.5,5]
surface_ticks = [-5,-4,-3,-2,-1,0,1,2,3,4,5]
surface_labels = [str(value) for value in surface_ticks]
speed_limits = [0.0,speed_range]
speed_contours = numpy.linspace(0.0,speed_range,13)
speed_ticks = [0,1,2,3]
speed_labels = [str(value) for value in speed_ticks]
wind_limits = [0,64]
# wind_limits = [-0.002,0.002]
pressure_limits = [935,1013]
friction_bounds = [0.01,0.04]
# vorticity_limits = [-1.e-2,1.e-2]
# def pcolor_afteraxes(current_data):
# surge_afteraxes(current_data)
# surge.plot.gauge_locations(current_data,gaugenos=[6])
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
def add_custom_colorbar_ticks_to_axes(axes, item_name, ticks, tick_labels=None):
axes.plotitem_dict[item_name].colorbar_ticks = ticks
axes.plotitem_dict[item_name].colorbar_tick_labels = tick_labels
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# ========================================================================
# Entire Gulf
# ========================================================================
gulf_xlimits = [clawdata.lower[0],clawdata.upper[0]]
gulf_ylimits = [clawdata.lower[1],clawdata.upper[1]]
gulf_shrink = 0.9
def gulf_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
surge_afteraxes(cd)
#
# Surface
#
plotfigure = plotdata.new_plotfigure(name='Surface - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
surgeplot.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=gulf_shrink)
surgeplot.add_land(plotaxes,topo_min=-10.0,topo_max=5.0)
# surge.plot.add_bathy_contours(plotaxes)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1,1,1,1,1,1,1,1]
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
# Speed
surgeplot.add_speed(plotaxes, plot_type='contourf',
contours=speed_contours,
shrink=gulf_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
# Land
surgeplot.add_land(plotaxes)
surgeplot.add_bathy_contours(plotaxes)
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction',
figno=fig_num_counter.get_counter())
plotfigure.show = friction_data.variable_friction and True
def friction_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
plt.title(r"Manning's $n$ Coefficient")
# surge_afteraxes(cd)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes,bounds=friction_bounds,shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
# ========================================================================
# LaTex Shelf
# ========================================================================
latex_xlimits = [-97.5,-88.5]
latex_ylimits = [27.5,30.5]
latex_shrink = 1.0
def latex_after_axes(cd):
if article:
plt.subplots_adjust(left=0.07, bottom=0.14, right=1.0, top=0.86)
else:
plt.subplots_adjust(right=1.0)
surge_afteraxes(cd)
#
# Surface
#
plotfigure = plotdata.new_plotfigure(name='Surface - LaTex Shelf',
figno=fig_num_counter.get_counter())
plotfigure.show = True
if article:
plotfigure.kwargs = {'figsize':(8,2.7), 'facecolor':'none'}
else:
plotfigure.kwargs = {'figsize':(9,2.7), 'facecolor':'none'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = latex_xlimits
plotaxes.ylimits = latex_ylimits
plotaxes.afteraxes = latex_after_axes
surgeplot.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=latex_shrink)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
# plotaxes.afteraxes = lambda cd: article_latex_after_axes(cd, landfall)
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', [-5,-2.5,0,2.5,5.0],
["-5.0","-2.5"," 0"," 2.5"," 5.0"])
# plotaxes.plotitem_dict['surface'].contour_cmap = plt.get_cmap('OrRd')
# surge.plot.add_surface_elevation(plotaxes,plot_type='contour')
surgeplot.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# Plot using jet and 0.0 to 5.0 to match figgen generated ADCIRC results
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - LaTex Shelf',
figno=fig_num_counter.get_counter())
plotfigure.show = True
if article:
plotfigure.kwargs = {'figsize':(8,2.7), 'facecolor':'none'}
else:
plotfigure.kwargs = {'figsize':(9,2.7), 'facecolor':'none'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = latex_xlimits
plotaxes.ylimits = latex_ylimits
plotaxes.afteraxes = latex_after_axes
surgeplot.add_speed(plotaxes, plot_type='contourf',
contours=speed_contours,
shrink=latex_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
# surge.plot.add_surface_elevation(plotaxes,plot_type='contour')
surgeplot.add_land(plotaxes)
# plotaxes.plotitem_dict['speed'].amr_patchedges_show = [1,1,0,0,0,0,0]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# ========================================================================
# Houston/Galveston
# ========================================================================
houston_xlimits = [-(95.0 + 26.0 / 60.0), -(94.0 + 25.0 / 60.0)]
houston_ylimits = [29.1, 29.0 + 55.0 / 60.0]
houston_shrink = 0.9
def houston_after_axes(cd):
if article:
plt.subplots_adjust(left=0.05, bottom=0.07, right=0.99, top=0.92)
else:
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
# surge.plot.gauge_locations(cd)
#
# Surface Elevations
#
plotfigure = plotdata.new_plotfigure(name='Surface - Houston/Galveston',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# if article:
# plotfigure.kwargs['figsize'] =
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = houston_xlimits
plotaxes.ylimits = houston_ylimits
plotaxes.afteraxes = houston_after_axes
surgeplot.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=houston_shrink)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# surge.plot.add_bathy_contours(plotaxes)
# Plot using jet and 0.0 to 5.0 to match figgen generated ADCIRC results
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - Houston/Galveston',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = houston_xlimits
plotaxes.ylimits = houston_ylimits
plotaxes.afteraxes = houston_after_axes
surgeplot.add_speed(plotaxes, plot_type='contourf',
contours=speed_contours,
shrink=houston_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
surgeplot.add_land(plotaxes)
# surge.plot.add_bathy_contours(plotaxes)
# plotaxes.plotitem_dict['speed'].amr_patchedges_show = [1,1,1,1,1,1,1,1]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,1,1,1,1,1]
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# ==========================
# Hurricane Forcing fields
# ==========================
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits, shrink=gulf_shrink)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits, plot_type='pcolor',
shrink=gulf_shrink)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# plotfigure.kwargs['figsize'] = (16,10)
def gauge_after_axes(cd):
if cd.gaugeno in [1,2,3,4]:
axes = plt.gca()
# # Add Kennedy gauge data
# kennedy_gauge = kennedy_gauges[gauge_name_trans[cd.gaugeno]]
# axes.plot(kennedy_gauge['t'] - seconds2days(date2seconds(gauge_landfall[0])),
# kennedy_gauge['mean_water'] + kennedy_gauge['depth'], 'k-',
# label='Gauge Data')
# Add GeoClaw gauge data
geoclaw_gauge = cd.gaugesoln
axes.plot(seconds2days(geoclaw_gauge.t - date2seconds(gauge_landfall[1])),
geoclaw_gauge.q[3,:] + gauge_surface_offset[0], 'b--',
label="GeoClaw")
# Add ADCIRC gauge data
# ADCIRC_gauge = ADCIRC_gauges[kennedy_gauge['gauge_no']]
# axes.plot(seconds2days(ADCIRC_gauge[:,0] - gauge_landfall[2]),
# ADCIRC_gauge[:,1] + gauge_surface_offset[1], 'r-.', label="ADCIRC")
# Fix up plot
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2,1])
axes.set_ylim([-1,5])
axes.set_xticks([-2,-1,0,1])
axes.set_xticklabels([r"$-2$",r"$-1$",r"$0$",r"$1$"])
axes.grid(True)
axes.legend()
plt.hold(False)
# surge.plot.gauge_afteraxes(cd)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2,1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1,5]
plotaxes.title = 'Surface'
plotaxes.afteraxes = gauge_after_axes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# =====================
# Gauge Location Plot
# =====================
gauge_xlimits = [-95.5, -94]
gauge_ylimits = [29.0, 30.0]
gauge_location_shrink = 0.75
def gauge_after_axes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
surgeplot.gauge_locations(cd, gaugenos=[1, 2, 3, 4])
plt.title("Gauge Locations")
plotfigure = plotdata.new_plotfigure(name='Gauge Locations',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = gauge_xlimits
plotaxes.ylimits = gauge_ylimits
plotaxes.afteraxes = gauge_after_axes
surgeplot.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=gauge_location_shrink)
# surge.plot.add_surface_elevation(plotaxes, plot_type="contourf")
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
surgeplot.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
# plotaxes.plotitem_dict['surface'].add_colorbar = False
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('gist_yarg')
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# ==============================================================
# Debugging Plots, only really work if using interactive plots
# ==============================================================
#
# Water Velocity Components
#
plotfigure = plotdata.new_plotfigure(name='Velocity Components - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = False
# X-Component
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(121)"
plotaxes.title = 'Velocity, X-Component'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surgeplot.water_u
plotitem.pcolor_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.pcolor_cmin = -speed_limits[1]
plotitem.pcolor_cmax = speed_limits[1]
plotitem.colorbar_shrink = gulf_shrink
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
surgeplot.add_land(plotaxes)
# Y-Component
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(122)"
plotaxes.title = 'Velocity, Y-Component'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surgeplot.water_v
plotitem.pcolor_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.pcolor_cmin = -speed_limits[1]
plotitem.pcolor_cmax = speed_limits[1]
plotitem.colorbar_shrink = gulf_shrink
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
surgeplot.add_land(plotaxes)
#
# Depth
#
plotfigure = plotdata.new_plotfigure(name='Depth - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = False
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'depth'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = 0
plotitem.imshow_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.imshow_cmin = 0
plotitem.imshow_cmax = 100
plotitem.colorbar_shrink = gulf_shrink
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,1,1,1,1]
# Surge field
plotfigure = plotdata.new_plotfigure(name='Surge Field',
figno=fig_num_counter.get_counter())
plotfigure.show = ((surge_data.wind_forcing or surge_data.pressure_forcing)
and False)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Storm Surge Source Term S"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surgeplot.pressure_field + 1
plotitem.pcolor_cmap = plt.get_cmap('PuBu')
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 1e-3
plotitem.add_colorbar = True
plotitem.colorbar_shrink = gulf_shrink
plotitem.colorbar_label = "Source Strength"
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,0,0]
surgeplot.add_land(plotaxes)
plotfigure = plotdata.new_plotfigure(name='Friction/Coriolis Source',
figno=fig_num_counter.get_counter())
plotfigure.show = False
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Friction/Coriolis Source"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surgeplot.pressure_field + 2
plotitem.pcolor_cmap = plt.get_cmap('PuBu')
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 1e-3
plotitem.add_colorbar = True
plotitem.colorbar_shrink = gulf_shrink
plotitem.colorbar_label = "Source Strength"
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,0,0]
surgeplot.add_land(plotaxes)
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
if article:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = [54,60,66,72,78,84] # list of frames to print
plotdata.print_gaugenos = [1,2,3,4] # list of gauges to print
plotdata.print_fignos = [4,5,6,7,10,3,300] # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
else:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1,2,3,4] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
fig_num_counter = surge.figure_counter()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir, 'amr.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surge.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2013, 10, 5, 0) - datetime.datetime(
2013, 1, 1, 0)
landfall = (landfall_dt.days - 1.0) * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surge.surge_afteraxes(
cd, track, landfall, plot_direction=False)
# Color limits
surface_range = 5.0
speed_range = 3.0
eta = physics.sea_level
if not isinstance(eta, list):
eta = [eta]
surface_limits = [eta[0] - surface_range, eta[0] + surface_range]
# surface_contours = numpy.linspace(-surface_range, surface_range,11)
surface_contours = [
-5, -4.5, -4, -3.5, -3, -2.5, -2, -1.5, -1, -0.5, 0.5, 1, 1.5, 2, 2.5,
3, 3.5, 4, 4.5, 5
]
surface_ticks = [-5, -4, -3, -2, -1, 0, 1, 2, 3, 4, 5]
surface_labels = [str(value) for value in surface_ticks]
speed_limits = [0.0, speed_range]
speed_contours = numpy.linspace(0.0, speed_range, 13)
speed_ticks = [0, 1, 2, 3]
speed_labels = [str(value) for value in speed_ticks]
wind_limits = [0, 64]
# wind_limits = [-0.002,0.002]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
# vorticity_limits = [-1.e-2,1.e-2]
# def pcolor_afteraxes(current_data):
# surge_afteraxes(current_data)
# surge.gauge_locations(current_data,gaugenos=[6])
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
def add_custom_colorbar_ticks_to_axes(axes,
item_name,
ticks,
tick_labels=None):
axes.plotitem_dict[item_name].colorbar_ticks = ticks
axes.plotitem_dict[item_name].colorbar_tick_labels = tick_labels
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# ========================================================================
# Entire Gulf
# ========================================================================
gulf_xlimits = [clawdata.lower[0], clawdata.upper[0]]
gulf_ylimits = [clawdata.lower[1], clawdata.upper[1]]
gulf_shrink = 0.9
def gulf_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
surge_afteraxes(cd)
#
# Surface
#
plotfigure = plotdata.new_plotfigure(name='Surface - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
surge.add_surface_elevation(plotaxes,
plot_type='contourf',
contours=surface_contours,
shrink=gulf_shrink)
surge.add_land(plotaxes, topo_min=-10.0, topo_max=5.0)
# surge.add_bathy_contours(plotaxes)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks,
surface_labels)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [
1, 1, 1, 1, 1, 1, 1, 1
]
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
# Speed
surge.add_speed(plotaxes,
plot_type='contourf',
contours=speed_contours,
shrink=gulf_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks,
speed_labels)
# Land
surge.add_land(plotaxes)
surge.add_bathy_contours(plotaxes)
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction',
figno=fig_num_counter.get_counter())
plotfigure.show = friction_data.variable_friction and True
def friction_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
plt.title(r"Manning's $n$ Coefficient")
# surge_afteraxes(cd)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surge.add_friction(plotaxes, bounds=friction_bounds, shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [
0, 0, 0, 0, 0, 0, 0
]
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
# ========================================================================
# LaTex Shelf
# ========================================================================
latex_xlimits = [-97.5, -88.5]
latex_ylimits = [27.5, 30.5]
latex_shrink = 1.0
def latex_after_axes(cd):
if article:
plt.subplots_adjust(left=0.07, bottom=0.14, right=1.0, top=0.86)
else:
plt.subplots_adjust(right=1.0)
surge_afteraxes(cd)
#
# Surface
#
plotfigure = plotdata.new_plotfigure(name='Surface - LaTex Shelf',
figno=fig_num_counter.get_counter())
plotfigure.show = True
if article:
plotfigure.kwargs = {'figsize': (8, 2.7), 'facecolor': 'none'}
else:
plotfigure.kwargs = {'figsize': (9, 2.7), 'facecolor': 'none'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = latex_xlimits
plotaxes.ylimits = latex_ylimits
plotaxes.afteraxes = latex_after_axes
surge.add_surface_elevation(plotaxes,
plot_type='contourf',
contours=surface_contours,
shrink=latex_shrink)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
# plotaxes.afteraxes = lambda cd: article_latex_after_axes(cd, landfall)
else:
add_custom_colorbar_ticks_to_axes(
plotaxes, 'surface', [-5, -2.5, 0, 2.5, 5.0],
["-5.0", "-2.5", " 0", " 2.5", " 5.0"])
# plotaxes.plotitem_dict['surface'].contour_cmap = plt.get_cmap('OrRd')
# surge.add_surface_elevation(plotaxes,plot_type='contour')
surge.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [
0, 0, 0, 0, 0, 0, 0
]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0, 0, 0, 0, 0, 0, 0]
# Plot using jet and 0.0 to 5.0 to match figgen generated ADCIRC results
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - LaTex Shelf',
figno=fig_num_counter.get_counter())
plotfigure.show = True
if article:
plotfigure.kwargs = {'figsize': (8, 2.7), 'facecolor': 'none'}
else:
plotfigure.kwargs = {'figsize': (9, 2.7), 'facecolor': 'none'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = latex_xlimits
plotaxes.ylimits = latex_ylimits
plotaxes.afteraxes = latex_after_axes
surge.add_speed(plotaxes,
plot_type='contourf',
contours=speed_contours,
shrink=latex_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks,
speed_labels)
# surge.add_surface_elevation(plotaxes,plot_type='contour')
surge.add_land(plotaxes)
# plotaxes.plotitem_dict['speed'].amr_patchedges_show = [1,1,0,0,0,0,0]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0, 0, 0, 0, 0, 0, 0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0, 0, 0, 0, 0, 0, 0]
# ==========================
# Hurricane Forcing fields
# ==========================
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
surge.add_pressure(plotaxes, bounds=pressure_limits, shrink=gulf_shrink)
surge.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
surge.add_wind(plotaxes,
bounds=wind_limits,
plot_type='pcolor',
shrink=gulf_shrink)
surge.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
plotfigure.kwargs['figsize'] = (16, 10)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1, 5]
plotaxes.title = 'Surface'
# plotaxes.afteraxes = gauge_after_axes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# =====================
# Gauge Location Plot
# =====================
gauge_xlimits = [-95.5, -94]
gauge_ylimits = [29.0, 30.0]
gauge_location_shrink = 0.75
def gauge_after_axes(cd):
# plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
surge.gauge_locations(cd, gaugenos=[1, 2, 3, 4])
plt.title("Gauge Locations")
plotfigure = plotdata.new_plotfigure(name='Gauge Locations',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = gauge_xlimits
plotaxes.ylimits = gauge_ylimits
plotaxes.afteraxes = gauge_after_axes
surge.add_surface_elevation(plotaxes,
plot_type='contourf',
contours=surface_contours,
shrink=gauge_location_shrink)
# surge.add_surface_elevation(plotaxes, plot_type="contourf")
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks,
surface_labels)
surge.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
# plotaxes.plotitem_dict['surface'].add_colorbar = False
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('gist_yarg')
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [
0, 0, 0, 0, 0, 0, 0
]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0, 0, 0, 0, 0, 0, 0]
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
if article:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = [54, 60, 66, 72, 78,
84] # list of frames to print
plotdata.print_gaugenos = [1, 2, 3, 4] # list of gauges to print
plotdata.print_fignos = [4, 5, 6, 7, 10, 3,
300] # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
else:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2, 3, 4] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
