def pdsi(precip_time_series: np.ndarray,
pet_time_series: np.ndarray,
awc,
data_start_year: int,
calibration_start_year: int,
calibration_end_year: int):
"""
This function computes the Palmer Drought Severity Index (PDSI), Palmer
Hydrological Drought Index (PHDI), and Palmer Z-Index.
:param precip_time_series: time series of monthly precipitation values, in inches
:param pet_time_series: time series of monthly PET values, in inches
:param awc: available water capacity (soil constant), in inches
:param data_start_year: initial year of the input precipitation and PET datasets,
both of which are assumed to start in January of this year
:param calibration_start_year: initial year of the calibration period
:param calibration_end_year: final year of the calibration period
:return: four numpy arrays containing PDSI, PHDI, PMDI, and Z-Index values respectively
"""
return palmer.pdsi(precip_time_series,
pet_time_series,
awc,
data_start_year,
calibration_start_year,
calibration_end_year)
def test_pdsi(self):
pdsi, phdi, pmdi, zindex = palmer.pdsi(
self.fixture_precips_mm_monthly, self.fixture_pet_mm,
self.fixture_awc_inches, self.fixture_data_year_start_monthly,
self.fixture_calibration_year_start_monthly,
self.fixture_calibration_year_end_monthly)
np.testing.assert_allclose(
pdsi,
self.fixture_palmer_pdsi_monthly,
atol=0.001,
equal_nan=True,
err_msg='PDSI not computed as expected from monthly inputs')
np.testing.assert_allclose(
phdi,
self.fixture_palmer_phdi_monthly,
atol=0.001,
equal_nan=True,
err_msg='PHDI not computed as expected from monthly inputs')
np.testing.assert_allclose(
pmdi,
self.fixture_palmer_pmdi_monthly,
atol=0.001,
equal_nan=True,
err_msg='PMDI not computed as expected from monthly inputs')
np.testing.assert_allclose(
zindex,
self.fixture_palmer_zindex_monthly,
atol=0.001,
equal_nan=True,
err_msg='Z-Index not computed as expected from monthly inputs')
def test_pdsi(
precips_mm_monthly,
pet_thornthwaite_mm,
awc_inches,
data_year_start_monthly,
calibration_year_start_monthly,
calibration_year_end_monthly,
palmer_pdsi_monthly,
palmer_phdi_monthly,
palmer_pmdi_monthly,
palmer_zindex_monthly,
):
pdsi, phdi, pmdi, zindex = palmer.pdsi(
precips_mm_monthly,
pet_thornthwaite_mm,
awc_inches,
data_year_start_monthly,
calibration_year_start_monthly,
calibration_year_end_monthly,
)
np.testing.assert_allclose(
pdsi,
palmer_pdsi_monthly,
atol=0.001,
equal_nan=True,
err_msg="PDSI not computed as expected from monthly inputs",
)
np.testing.assert_allclose(
phdi,
palmer_phdi_monthly,
atol=0.001,
equal_nan=True,
err_msg="PHDI not computed as expected from monthly inputs",
)
np.testing.assert_allclose(
pmdi,
palmer_pmdi_monthly,
atol=0.001,
equal_nan=True,
err_msg="PMDI not computed as expected from monthly inputs",
)
np.testing.assert_allclose(
zindex,
palmer_zindex_monthly,
atol=0.001,
equal_nan=True,
err_msg="Z-Index not computed as expected from monthly inputs",
)
def pdsi(
ppt: pd.Series,
pet: pd.Series,
awc: float,
pad_years: int = 10,
y1: int = CLIMATE_NORMAL_PERIOD[0],
y2: int = CLIMATE_NORMAL_PERIOD[1],
) -> np.ndarray:
"""Calculate the Palmer Drought Severity Index (PDSI)
This is a simple wrapper of the climate_idicies package implementation of pdsi. The wrapper
includes a spin up period (`pad_years`) using a repeated climatology calculated between `y1`
and `y2`.
Note that this is not a perfect reproduction of the Terraclimate PDSI implementation. See
https://github.com/carbonplan/cmip6-downscaling/issues/4 for more details.
Parameters
----------
ppt : pd.Series
Monthly precipitation timeseries (mm)
pet : pd.Series
Monthly PET timeseries (mm)
awc : float
Soil water capacity (mm)
pad_years : int
Number of years of the climatology to prepend to the timeseries of ppt and pet
y1 : int
Start year for climate normal period
y2 : int
End year for climate normal period
Returns
-------
pdsi : pd.Series
Timeseries of PDSI (unitless)
"""
pad_months = pad_years * MONTHS_PER_YEAR
assert len(ppt) > pad_months
y0 = ppt.index.year[0] - pad_years # start year (with pad)
awc_in = awc / MM_PER_IN
# calculate the climatology for ppt and pet (for only the climate normal period)
df = pd.concat([pet, ppt], axis=1)
climatology = df.loc[str(y1) : str(y2)].groupby(by=by_month).mean()
# repeat climatology for pad_years, then begine the time series
ppt_extended = np.concatenate([np.tile(climatology['ppt'].values, pad_years), ppt.values])
ppt_extended_in = ppt_extended / MM_PER_IN
pet_extended = np.concatenate([np.tile(climatology['pet'].values, pad_years), pet.values])
pet_extended_in = pet_extended / MM_PER_IN
# set all zero ppt months to SMALL_PPT: this gets around a divide by zero
# in the pdsi function below.
ppt_zeros = ppt_extended_in <= 0
if ppt_zeros.any():
ppt_extended_in[ppt_zeros] = SMALL_PPT
pdsi_vals = palmer.pdsi(ppt_extended_in, pet_extended_in, awc_in, y0, y1, y2)[0]
pdsi_vals = pdsi_vals.clip(-16, 16)
out = pd.Series(pdsi_vals[pad_months:], index=ppt.index)
return out