def quit(code=0, _self=cmd):
'''
DESCRIPTION
"quit" terminates the program.
USAGE
quit
PYMOL API
cmd.quit()
'''
code = int(code)
if thread.get_ident() == pymol.glutThread:
_self._quit(code, _self)
else:
try:
_self.lock(_self)
_cmd.do(_self._COb,
"_ time.sleep(0.100);cmd._quit(%d)" % (code), 0, 0)
# allow time for a graceful exit from the calling thread
try:
thread.exit()
except SystemExit:
pass
finally:
_self.unlock(-1, _self=_self)
return None
def quit(_self=cmd):
'''
DESCRIPTION
"quit" terminates the program.
USAGE
quit
PYMOL API
cmd.quit()
'''
if thread.get_ident() == pymol.glutThread:
_self._quit(_self)
else:
try:
_self.lock(_self)
_cmd.do(_self._COb,"_ time.sleep(0.100);cmd._quit()",0,0)
# allow time for a graceful exit from the calling thread
try:
thread.exit()
except SystemExit:
pass
finally:
_self.unlock(-1,_self=_self)
return None
def do(commands, log=1, echo=1, flush=0, _self=cmd):
# WARNING: don't call this routine if you already have the API lock
# use cmd._do instead
'''
DESCRIPTION
"do" makes it possible for python programs to issue simple PyMOL
commands as if they were entered on the command line.
PYMOL API
cmd.do( commands )
USAGE (PYTHON)
from pymol import cmd
cmd.do("load file.pdb")
'''
r = DEFAULT_ERROR
log = int(log)
if is_list(commands):
cmmd_list = commands
else:
cmmd_list = [commands]
n_cmmd = len(cmmd_list)
if n_cmmd > 1: # if processing a list of commands, defer updates
defer = _self.get_setting_legacy("defer_updates")
_self.set('defer_updates', 1)
for cmmd in cmmd_list:
lst = string.split(string.replace(cmmd, chr(13), chr(10)), chr(10))
if len(lst) < 2:
for a in lst:
if (len(a)):
try:
_self.lock(_self)
r = _cmd.do(_self._COb, a, log, echo)
finally:
_self.unlock(r, _self)
else:
r = DEFAULT_SUCCESS
else:
try:
_self.lock(_self)
do_flush = flush or (
(thread.get_ident() == _self._pymol.glutThread)
and _self.lock_api_allow_flush)
for a in lst:
if len(a):
r = _cmd.do(_self._COb, a, log, echo)
if do_flush:
_self.unlock(r, _self) # flushes
_self.lock(_self)
else:
r = DEFAULT_SUCCESS
finally:
_self.unlock(r, _self)
if n_cmmd > 1:
_self.set('defer_updates', defer)
if _self._raising(r, _self): raise pymol.CmdException
return r
def do(commands,log=1,echo=1,flush=0,_self=cmd):
# WARNING: don't call this routine if you already have the API lock
# use cmd._do instead
'''
DESCRIPTION
"do" makes it possible for python programs to issue simple PyMOL
commands as if they were entered on the command line.
PYMOL API
cmd.do( commands )
USAGE (PYTHON)
from pymol import cmd
cmd.do("load file.pdb")
'''
r = DEFAULT_ERROR
log = int(log)
if is_list(commands):
cmmd_list = commands
else:
cmmd_list = [ commands ]
n_cmmd = len(cmmd_list)
if n_cmmd>1: # if processing a list of commands, defer updates
defer = _self.get_setting_legacy("defer_updates")
_self.set('defer_updates',1)
for cmmd in cmmd_list:
lst = string.split(string.replace(cmmd,chr(13),chr(10)),chr(10))
if len(lst)<2:
for a in lst:
if(len(a)):
try:
_self.lock(_self)
r = _cmd.do(_self._COb,a,log,echo)
finally:
_self.unlock(r,_self)
else:
r = DEFAULT_SUCCESS
else:
try:
_self.lock(_self)
do_flush = flush or ((thread.get_ident() == _self._pymol.glutThread)
and _self.lock_api_allow_flush)
for a in lst:
if len(a):
r = _cmd.do(_self._COb,a,log,echo)
if do_flush:
_self.unlock(r,_self) # flushes
_self.lock(_self)
else:
r = DEFAULT_SUCCESS
finally:
_self.unlock(r,_self)
if n_cmmd>1:
_self.set('defer_updates',defer)
if _self._raising(r,_self): raise pymol.CmdException
return r