Python clustal_from_alignment Beispiele

Beispiel #1

Datei: test_clustal.py Projekt: mr-c/cogent3

 def test_clustal_from_alignment(self):
     """should return correct clustal string."""
     self.assertEqual(clustal_from_alignment({}), "")
     self.assertEqual(clustal_from_alignment(self.alignment_dict),
                      self.clustal_with_label)
     self.assertEqual(
         clustal_from_alignment(self.alignment_dict, wrap=2),
         self.clustal_with_label_lw2,
     )

Beispiel #2

 def test_clustal_from_alignment_reordered(self):
     """should return correct clustal string."""
     self.assertEqual(
         clustal_from_alignment(self.alignment_object),
         self.clustal_with_label_reordered,
     )
     self.assertEqual(
         clustal_from_alignment(self.alignment_object, interleave_len=2),
         self.clustal_with_label_lw2_reordered,
     )