def main(fname_data, fname_sorting, sign, outfname, drop_artifacts=False):
"""
read groups from sorting for conversion
"""
man = Combinato(fname_data, sign, fname_sorting)
# man.set_sign_times_spikes(sign)
# res = man.init_sorting(fname_sorting)
fn1 = os.path.basename(fname_data)
# fn2 = os.path.basename(fname_sorting)
joined = man.get_groups_joined()
ch_name = man.header['AcqEntName']
# ugly: this works only if you use the CSCxy convention!
go_on = False
try:
ch_num = int(fn1[8:-3])
go_on = True
except ValueError as error:
print(error)
print('Cannot find channel number in' ' filename {}'.format(fn1))
info_row = None
if go_on:
info_row = [ch_num, ch_name]
info_dict = convert_to_mat(joined, outfname, drop_artifacts)
info_row += [info_dict[GROUP_ART], info_dict[GROUP_NOCLASS]]
del info_dict[GROUP_ART]
del info_dict[GROUP_NOCLASS]
for key in sorted(info_dict.keys()):
info_row.append(info_dict[key])
del man
return info_row
def main(sign, label):
"""
show group sizes in h5files
"""
files = h5files(os.getcwd())
n_arti_total = 0
for fname in files:
man = Combinato(fname, sign, label)
if not man.initialized:
continue
groups = man.get_groups(times=False, spikes=False)
if 0 in groups.keys():
n_unassigned = len(groups[0])
if -1 in groups.keys():
n_arti = len(groups[-1])
else:
n_arti = 0
print('{} {} groups, {} artifacts'.
format(os.path.basename(fname), len(groups), n_arti))
n_arti_total += n_arti
return n_arti_total
def main(fname_data, fname_sorting, sign, outfname, drop_artifacts=False):
"""
read groups from sorting for conversion
"""
man = Combinato(fname_data, sign, fname_sorting)
# man.set_sign_times_spikes(sign)
# res = man.init_sorting(fname_sorting)
fn1 = os.path.basename(fname_data)
# fn2 = os.path.basename(fname_sorting)
joined = man.get_groups_joined()
ch_name = man.header['AcqEntName']
# ugly: this works only if you use the CSCxy convention!
go_on = False
try:
ch_num = int(fn1[8:-3])
go_on = True
except ValueError as error:
print(error)
print('Cannot find channel number in'
' filename {}'.format(fn1))
info_row = None
if go_on:
info_row = [ch_num, ch_name]
info_dict = convert_to_mat(joined, outfname, drop_artifacts)
info_row += [info_dict[GROUP_ART], info_dict[GROUP_NOCLASS]]
del info_dict[GROUP_ART]
del info_dict[GROUP_NOCLASS]
for key in sorted(info_dict.keys()):
info_row.append(info_dict[key])
del man
return info_row