def E(level=1):
if level == 0:
from common import level1 as P
P = partial(P, FOnly=True) # high order function, here we only test LEVEL-1 F CNN
elif level == 1:
from common import level1 as P
elif level == 2:
from common import level2 as P
else:
from common import level3 as P
data = getDataFromTxt(TXT)
error = np.zeros((len(data), 5))
for i in range(len(data)):
imgPath, bbox, landmarkGt = data[i]
img = cv2.imread(imgPath, cv2.CV_LOAD_IMAGE_GRAYSCALE)
assert(img is not None)
logger("process %s" % imgPath)
landmarkP = P(img, bbox)
# real landmark
landmarkP = bbox.reprojectLandmark(landmarkP)
landmarkGt = bbox.reprojectLandmark(landmarkGt)
error[i] = evaluateError(landmarkGt, landmarkP, bbox)
return error
def geneDataTxt(imgPath, landmarks):
imgTxt = 'dataset/data/testImageList.txt'
data = getDataFromTxt(imgTxt, False, False) #image_path,bbox
trainData = defaultdict(lambda: dict(landmarks=[], patches=[], label=[]))
logger(
"generate 25 positive samples and 500 negative samples for per landmark"
)
trainData = generateSamples(trainData, data, landmarks)
arr = []
for idx, name in types:
patches = np.asarray(trainData[name]['patches'])
landmarks = np.asarray(trainData[name]['landmarks'])
label = np.asarray(trainData[name]['label'])
arr1 = landmarks.reshape(1, -1)
arr.append(arr1)
patches = processImage(patches)
shuffle_in_unison_scary(patches, landmarks, label)
with open('test/%s.txt' % (name), 'w') as fd:
fd.append(landmarks.astype(np.float32))
fd.append(patches.astype(np.float32))
fd.append(label.astype(np.uint8))
def generateSamples(trainData, data, landmarks):
t = 0
for (imgPath, bbox) in data:
img = cv2.imread(imgPath, cv2.CV_LOAD_IMAGE_GRAYSCALE)
assert (img is not None)
logger('process %s' % imgPath)
height, width = img.shape[:2]
#downsampled by 3: 3X3 Patch
size = (int(width / 3), int(height / 3))
img = cv2.resize(img, size, interpolation=cv2.INTER_NEAREST)
trainData, t = getTrainData(trainData, landmarks, img)
print('After getting raw data,there are %d datas') % t
r2 = 20 / 3
r3 = 10 #400 / 3
for idx, landmark in enumerate(landmarks):
print '@@@@@@@@@@@@@@' + str(idx)
# 25 Positive samples
landmarkPs25 = randomShiftWithArgument(landmark, 0, r2, 25)
trainData, t = getTrainData(trainData, landmarkPs25, img)
#print ('After getting 25 positive samples,there are %d datas') % t
# 500 negative samples
landmarkNs500 = randomShiftWithArgument(landmark, r2, r3, 500)
trainData, t = getTrainData(trainData, landmarkNs500, img)
print(
'After getting 25 positive and 500 negative samples,there are %d datas'
) % t
return trainData
def generateSamples(trainData, data):
t = 0
print '##########################################################################'
for (imgPath, landmarkGt, bbox) in data:
img = cv2.imread(imgPath, cv2.CV_LOAD_IMAGE_GRAYSCALE)
assert (img is not None)
logger("process %s" % imgPath)
height, width = img.shape[:2]
#downsampled by 3: 3x3 patch
cephaImg = cv2.resize(img, (int(width / 3), int(height / 3)),
interpolation=cv2.INTER_NEAREST)
#raw data
#trainData,t = getData(trainData,landmarkGt,cephaImg,t)
#print ('After getting raw data,there are %d datas') % t
r1 = 20 / 3
r2 = 20 #60/3
r3 = 400 #400/3
for idx, landmark in enumerate(landmarkGt): #19个landmark
# 25 Positive samples
landmarkPs25 = randomShiftWithArgument(landmark, 0, r1, 25)
trainData, t = getData(trainData, landmarkPs25, cephaImg, t)
print('After getting 25 positive samples,there are %d datas') % t
# 500 negative samples
landmarkNs500 = randomShiftWithArgument(landmark, r2, r3, 500)
trainData, t = getData(trainData, landmarkNs500, cephaImg, t)
print(
'After getting 25 positive and 500 negative samples,there are %d datas'
) % t
if idx == 1:
break
return trainData
def __send_message(sc, text, channel, thread_ts="", icon_url='ru', emoji='null'):
# Required slackclient, channel, thread_ts
# thread_ts if this is a thread response
# icon_url to override default, set this to 'emoji' override with an emoji
# emoji set this to a valid emoji and ensure icon_url='emoji'
try:
if "emoji" in icon_url:
res = sc.api_call('chat.postMessage',
username=BOT_NAME,
icon_emoji=emoji,
as_user='******',
channel=channel,
text=text,
unfurl_links='true',
thread_ts=thread_ts)
else:
res = sc.api_call('chat.postMessage',
username=BOT_NAME,
icon_url=icon_url,
as_user='******',
channel=channel,
text=text,
unfurl_links='true',
thread_ts=thread_ts)
logger('info', res)
if res['ok'] != "True":
logger("warn", "Error: __send_message API Error: %s" % res['error'])
logger('info', res)
# KeyError is not going through logger, debug it
except KeyError as e:
logger("ignore", str(e) + " error in __send_message.")
except Exception as e:
logger("warn", "Unknown error in __send_message: " + str(e))
def geneDataTxt(imgPath,landmarkREF,mode = 'test'):
imgTxt = 'dataset/data/testImageList.txt'
data = getDataFromTxt(imgTxt,False,False) #image_path,bbox
testData = defaultdict(lambda:dict(landmarks=[],patches=[],label=[]))
logger("generate 25 positive samples and 500 negative samples for per landmark")
testData = generateSamples(testData,data,landmarkREF)
for idx,name in types:
patches = np.asarray(testData[name]['patches'])
landmarks = np.asarray(testData[name]['landmarks'])
#label = np.asarray(testData[name]['label'])
patches = processImage(patches)
shuffle_in_unison_scary(patches,landmarks)
createDir('dataset/test/%s' % imgPath[-7:-4])
with h5py.File('dataset/test/%s/%s.h5' % (imgPath[-7:-4],name),'w') as h5:
h5['data'] = patches.astype(np.float32)
h5['landmark'] = landmarks.astype(np.float32)
#h5['label'] = label.astype(np.uint8)
with open('dataset/test/%s/%s.txt' % (imgPath[-7:-4],name),'w') as fd:
fd.write('dataset/test/%s/%s.h5'% (imgPath[-7:-4],name))
'''with open('dataset/test/%s.txt' % (name),'w') as fd:
def E(level=1):
if level == 0:
from common import level1 as P
P = partial(P, FOnly=True) # high order function, here we only test LEVEL-1 F CNN
elif level == 1:
from common import level1 as P
elif level == 2:
from common import level2 as P
else:
from common import level3 as P
data = getDataFromTxt(TXT)
error = np.zeros((len(data), 5))
for i in range(len(data)):
imgPath, bbox, landmarkGt = data[i]
img = cv2.imread(imgPath, cv2.CV_LOAD_IMAGE_GRAYSCALE)
assert(img is not None)
logger("process %s" % imgPath)
landmarkP = P(img, bbox)
# real landmark
landmarkP = bbox.reprojectLandmark(landmarkP)
landmarkGt = bbox.reprojectLandmark(landmarkGt)
error[i] = evaluateError(landmarkGt, landmarkP, bbox)
return error
def navigate_to():
"""
Navigation path:
Personal Information -> Course Registration -> Add or Drop Classes -> Registration Term -> Add or Drop Classes
"""
common.logger("Navigating to add/drop page... \n")
# Click: Course Registration
data.driver.find_elements_by_xpath(
"//*[contains(text(), 'Course Registration')]")[0].click()
common.logger("Click: Course Registration")
WebDriverWait(data.driver,
10).until(ec.title_contains("Course Registration"))
common.random_wait()
# Click: Add or Drop Classes
data.driver.find_elements_by_xpath(
"//*[contains(text(), 'Add or Drop Classes')]")[0].click()
common.logger("Click: Add or Drop Classes")
WebDriverWait(data.driver,
10).until(ec.title_contains("Registration Term"))
common.random_wait()
# Click: submit
data.driver.find_elements_by_xpath("//*[@value='Submit']")[0].click()
common.logger("Click: submit")
WebDriverWait(data.driver,
10).until(ec.title_contains("Add or Drop Classes"))
if "You may register during the following times:" in data.driver.page_source:
common.logger(
"Got add/drop page! "
f"Please wait {data.info.start_timestamp - int(time.time())} seconds... \n"
)
def generate_data(ftxt, fname):
data = getDataFromTxt(ftxt)
F_imgs = []
F_landmarks = []
F_genders = []
F_smiles = []
F_glasses = []
F_poses = []
F_all_attr = []
for (imgPath, bbox, landmarkGt, gender, smile, glasses, pose,
all_attr) in data:
img = cv2.imread(imgPath, cv2.IMREAD_GRAYSCALE)
print(imgPath)
assert (img is not None)
logger("process %s" % imgPath)
f_bbox = bbox
#f_bbox = bbox.subBBox(-0.05, 1.05, -0.05, 1.05)
f_face = img[f_bbox.top:f_bbox.bottom + 1,
f_bbox.left:f_bbox.right + 1]
f_face = cv2.resize(f_face, (39, 39))
f_face = f_face.reshape((39, 39, 1))
f_face = f_face / 255.0
f_landmark = landmarkGt.reshape((10))
F_imgs.append(f_face)
F_landmarks.append(f_landmark)
F_genders.append(gender)
F_smiles.append(smile)
F_glasses.append(glasses)
F_poses.append(pose)
F_all_attr.append(all_attr)
F_imgs = np.asarray(F_imgs)
F_landmarks = np.asarray(F_landmarks)
F_genders = np.asarray(F_genders)
F_smiles = np.asarray(F_smiles)
F_glasses = np.asarray(F_glasses)
F_poses = np.asarray(F_poses)
F_all_attr = np.asarray(F_all_attr)
shuffle_in_unison_scary(F_imgs, F_landmarks, F_genders, F_smiles,
F_glasses, F_poses, F_all_attr)
logger("generate %s" % fname)
with h5py.File(fname, 'w') as h5:
h5['data'] = F_imgs.astype(np.float32)
h5['landmarks'] = F_landmarks.astype(np.float32)
h5['genders'] = F_genders.astype(np.float32)
h5['smiles'] = F_smiles.astype(np.float32)
h5['glasses'] = F_glasses.astype(np.float32)
h5['poses'] = F_poses.astype(np.float32)
h5['all_attr'] = F_all_attr.astype(np.float32)
def refresh():
common.logger("Refreshing! \n")
data.driver.refresh()
try:
data.driver.switch_to.alert.accept()
except selenium.common.exceptions.NoAlertPresentException:
pass
WebDriverWait(data.driver,
10).until(ec.title_contains("Add or Drop Classes"))
def wait_until():
now = int(time.time())
waiting = data.info.start_timestamp - now
if now < data.info.start_timestamp:
common.logger(f"Please wait {waiting} seconds "
f"until {data.info.start_time}, "
f"during the time, do not close this program. \n")
if waiting >= 300:
time.sleep(waiting - 299)
common.logger(
f"5 minutes to {data.info.start_time}, now login! \n")
login()
navigate_to()
else:
common.logger(
f"Less than 5 minutes to {data.info.start_time}, now login! \n"
)
login()
navigate_to()
time.sleep(waiting - 5)
while int(time.time()) <= data.info.start_timestamp - 1:
time.sleep(0.1)
else:
common.logger("Now login! \n")
login()
navigate_to()
def define(variables,
msgdict,
alternate_definition_index=0,
ud_results_per_page=7):
if msgdict["message"] in variables.yamldata["words"]:
sa_def = __sa_dictionary(str(msgdict["message"]), variables.yamldata)
resp = '<@{}> The Sys Admin dictionary defines `{}` as \n>>>{}'.format(
msgdict["caller"], msgdict["message"], sa_def)
__send_message(variables.sc, resp, msgdict["channel"],
msgdict["thread_ts"], custom_icon("icon_tux"))
elif msgdict["message"]:
parsed_message = msgdict["message"].split('alt:', 1)
if len(parsed_message) > 1:
try:
alternate_definition_index = abs(int(parsed_message[1]))
except ValueError:
pass
payload = {'term': parsed_message[0].strip()}
if alternate_definition_index >= ud_results_per_page:
payload['page'] = (alternate_definition_index //
ud_results_per_page) + 1
alternate_definition_index %= ud_results_per_page
r = requests.get("http://www.urbandictionary.com/define.php",
params=payload)
try:
soup = BeautifulSoup(r.content, "lxml")
except ValueError:
soup = "failure"
logger("warn", "soup failure")
definitions = soup.findAll("div", attrs={"class": "meaning"})
try:
resp = '<@{}> Urban Dictionary defines `{}` as ```{}```'.format(
msgdict["caller"], parsed_message[0].strip(),
definitions[alternate_definition_index].text)
except IndexError:
resp = '<@{}> Urban Dictionary doesn\'t have `{}` definitions for `{}`...'.format(
msgdict["caller"], alternate_definition_index + 1,
parsed_message[0].strip())
__send_message(variables.sc, resp, msgdict["channel"],
msgdict["thread_ts"],
custom_icon("icon_urban_dictionary"))
else:
__send_message(variables.sc,
"what exactly are you asking me to define?",
msgdict["channel"], msgdict["thread_ts"],
custom_icon("icon_urban_dictionary"))
def generate(ftxt, mode, argument=False):
'''
第二阶段数据源制作
:param ftxt: 数据源文件位置和label
:param mode: 训练或测试
:param argument:
:return:
'''
data = getDataFromTxt(ftxt)
trainData = defaultdict(lambda: dict(patches=[], landmarks=[]))
for (imgPath, bbox, landmarkGt) in data:
img = cv2.imread(imgPath, cv2.IMREAD_GRAYSCALE)
assert (img is not None)
logger("process %s" % imgPath)
landmarkPs = randomShiftWithArgument(landmarkGt, 0.05)
if not argument:
landmarkPs = [landmarkPs[0]]
for landmarkP in landmarkPs:
for idx, name, padding in types:
patch, patch_bbox = getPatch(img, bbox, landmarkP[idx],
padding)
patch = cv2.resize(patch, (15, 15))
patch = patch.reshape((1, 15, 15))
trainData[name]['patches'].append(patch)
_ = patch_bbox.project(bbox.reproject(landmarkGt[idx]))
trainData[name]['landmarks'].append(_)
for idx, name, padding in types:
logger('writing training data of %s' % name)
patches = np.asarray(trainData[name]['patches'])
landmarks = np.asarray(trainData[name]['landmarks'])
patches = processImage(patches)
shuffle_in_unison_scary(patches, landmarks)
with h5py.File(
'/python/face_key_point/data_hdf5/train/2_%s/%s.h5' %
(name, mode), 'w') as h5:
h5['data'] = patches.astype(np.float32)
h5['landmark'] = landmarks.astype(np.float32)
with open(
'/python/face_key_point/data_hdf5/train/2_%s/%s.txt' %
(name, mode), 'w') as fd:
fd.write('/python/face_key_point/data_hdf5/train/2_%s/%s.h5' %
(name, mode))
def __init__(self, serverName, serverPort, cfg_params, proxyPath=None):
"""
Open the communication with an Analysis Server by passing the server URL and the port
"""
self.ServerTwiki = (
"https://twiki.cern.ch/twiki/bin/view/CMS/SWGuideCrabServerForUsers#Server_available_for_users"
)
self.asSession = C_AS_Session(serverName, serverPort)
self.cfg_params = cfg_params
self.userSubj = ""
self.serverName = serverName
credentialType = "Proxy"
if common.scheduler.name().upper() in ["CAF", "LSF"]:
credentialType = "Token"
CliServerParams(self)
self.crab_task_name = common.work_space.topDir().split("/")[-2] # nice task name "crab_0_..."
configAPI = {"credential": credentialType, "logger": common.logger()}
CredAPI = CredentialAPI(configAPI)
try:
self.userSubj = CredAPI.getSubject()
except Exception, err:
common.logger.debug("Getting Credential Subject: " + str(traceback.format_exc()))
raise CrabException("Error Getting Credential Subject")
def configure(self,cfg_params):
self.cfg_params = cfg_params
self.deep_debug= self.cfg_params.get("USER.deep_debug",'0')
server_check = self.cfg_params.get("CRAB.server_name",None)
if self.deep_debug == '1' and server_check != None :
msg = 'You are asking the deep_debug, but it cannot works using the server.\n'
msg += '\t The functionality will not have effect.'
common.logger.info(msg)
self.schedulerName = self.cfg_params.get("CRAB.scheduler",'') # this should match with the bosslite requirements
self.rb_param_file=''
self.wrapper = cfg_params.get('CRAB.jobtype').upper()+'.sh'
## Add here the map for others Schedulers (LSF/CAF/CondorG)
SchedMap = {'glite': schedulerGlite(),
'condor': 'SchedulerCondor',\
'condor_g': 'SchedulerCondorG',\
'glidein': 'SchedulerGlidein',\
'remoteglidein': 'SchedulerRemoteglidein',\
'lsf': 'SchedulerLsf',\
'caf': 'SchedulerLsf',\
'sge': 'SchedulerSge',\
'arc': 'SchedulerARC',\
'pbs': 'SchedulerPbs'
}
self.schedulerConfig = common.scheduler.realSchedParams(cfg_params)
self.schedulerConfig['name'] = SchedMap[(self.schedulerName).lower()]
self.schedulerConfig['timeout'] = self.setBliteTimeout()
self.schedulerConfig['skipProxyCheck'] = True
self.schedulerConfig['logger'] = common.logger()
self.session = None
return
def __init__(self, serverName, serverPort, cfg_params, proxyPath=None):
"""
Open the communication with an Analysis Server by passing the server URL and the port
"""
self.ServerTwiki = 'https://twiki.cern.ch/twiki/bin/view/CMS/SWGuideCrabServerForUsers#Server_available_for_users'
self.asSession = C_AS_Session(serverName, serverPort)
self.cfg_params = cfg_params
self.userSubj = ''
self.serverName = serverName
credentialType = 'Proxy'
if common.scheduler.name().upper() in ['CAF','LSF']:
credentialType = 'Token'
CliServerParams(self)
self.crab_task_name = common.work_space.topDir().split('/')[-2] # nice task name "crab_0_..."
configAPI = {'credential' : credentialType, \
'logger' : common.logger() }
CredAPI = CredentialAPI( configAPI )
try:
self.userSubj = CredAPI.getSubject()
except Exception, err:
common.logger.debug("Getting Credential Subject: " +str(traceback.format_exc()))
raise CrabException("Error Getting Credential Subject")
def ce_list(self):
ceParser = CEBlackWhiteListParser(self.EDG_ce_white_list,
self.EDG_ce_black_list,
common.logger())
wl = ','.join(ceParser.whiteList()) or None
bl = ','.join(ceParser.blackList()) or None
return '', wl, bl
def __init__(self, endpoint, cachepath='', cacheduration = 0.5, timeout = 20, \
type = "txt/csv", logger = None ):
## if not already defined set default CachePath to $HOME/.cms_crab
if cachepath =='':
import os
if os.getenv('CMS_CRAB_CACHE_DIR'):
cachepath ='%s/.cms_crab'%os.getenv('CMS_CRAB_CACHE_DIR')
elif os.getenv('HOME'):
cachepath='%s/.cms_crab'%os.getenv('HOME')
else:
cachepath = '/tmp/crab_cache_' + pwd.getpwuid(os.getuid())[0]
if not os.path.isdir(cachepath):
try:
os.mkdir(cachepath)
except:
common.logger.info('Warning cannot create %s. Using current directory'%cachepath)
cachepath=os.getcwd()
if not logger: logger = common.logger()
self.wmcorecache = {}
self.wmcorecache['logger'] = logger
self.wmcorecache['cachepath'] = cachepath ## cache area
self.wmcorecache['cacheduration'] = 0.5 ## half an hour
self.wmcorecache['timeout'] = 20 ## seconds
self.wmcorecache['endpoint'] = endpoint
def __init__(self, port, allowed_lost, window_size, loss_rate, corrupt_rate, log_file):
self.my_tunnel = common.magic_tunnel(loss_rate, corrupt_rate)
self.my_logger = common.logger(log_file)
self.my_wildcat_receiver = wildcat_receiver.wildcat_receiver(allowed_lost, window_size, self.my_tunnel, self.my_logger)
self.my_wildcat_receiver.start()
self.my_tunnel.my_recv = self.my_wildcat_receiver.receive
self.udp_receiver = start_receiver.UDP_receiver(port, self.my_tunnel)
self.udp_receiver.start()
def generate(ftxt, mode, argument=False):
"""
Generate Training Data for LEVEL-3
mode = train or test
"""
data = getDataFromTxt(ftxt)
trainData = defaultdict(lambda: dict(patches=[], landmarks=[]))
for (imgPath, bbox, landmarkGt) in data:
img = cv2.imread(imgPath, cv2.CV_LOAD_IMAGE_GRAYSCALE)
assert (img is not None)
logger("process %s" % imgPath)
landmarkPs = randomShiftWithArgument(landmarkGt, 0.01)
if not argument:
landmarkPs = [landmarkPs[0]]
for landmarkP in landmarkPs:
for idx, name, padding in types:
patch, patch_bbox = getPatch(img, bbox, landmarkP[idx],
padding)
patch = cv2.resize(patch, (15, 15))
patch = patch.reshape((1, 15, 15))
trainData[name]['patches'].append(patch)
_ = patch_bbox.project(bbox.reproject(landmarkGt[idx]))
trainData[name]['landmarks'].append(_)
for idx, name, padding in types:
logger('writing training data of %s' % name)
patches = np.asarray(trainData[name]['patches'])
landmarks = np.asarray(trainData[name]['landmarks'])
patches = processImage(patches)
shuffle_in_unison_scary(patches, landmarks)
with h5py.File(
'/home/tyd/下载/deep_landmark/mydataset/mytrain/3_%s/%s.h5' %
(name, mode), 'w') as h5:
h5['data'] = patches.astype(np.float32)
h5['landmark'] = landmarks.astype(np.float32)
with open(
'/home/tyd/下载/deep_landmark/mydataset/mytrain/3_%s/%s.txt' %
(name, mode), 'w') as fd:
fd.write(
'/home/tyd/下载/deep_landmark/mydataset/mytrain/3_%s/%s.h5' %
(name, mode))
def E():
data = getDataFromTxt(TXT)
error = np.zeros((len(data), 3))
for i in range(len(data)):
imgPath, bbox, landmarkGt = data[i]
landmarkGt = landmarkGt[2:, :]
img = cv2.imread(imgPath, cv2.CV_LOAD_IMAGE_GRAYSCALE)
assert(img is not None)
logger("process %s" % imgPath)
landmarkP = NM(img, bbox)
# real landmark
landmarkP = bbox.reprojectLandmark(landmarkP)
landmarkGt = bbox.reprojectLandmark(landmarkGt)
error[i] = evaluateError(landmarkGt, landmarkP, bbox)
return error
def E():
data = getDataFromTxt(TXT)
error = np.zeros((len(data), 3))
for i in range(len(data)):
imgPath, bbox, landmarkGt = data[i]
landmarkGt = landmarkGt[2:, :]
img = cv2.imread(imgPath, cv2.CV_LOAD_IMAGE_GRAYSCALE)
assert (img is not None)
logger("process %s" % imgPath)
landmarkP = NM(img, bbox)
# real landmark
landmarkP = bbox.reprojectLandmark(landmarkP)
landmarkGt = bbox.reprojectLandmark(landmarkGt)
error[i] = evaluateError(landmarkGt, landmarkP, bbox)
return error
def BuildJobList(self, type=0):
# total jobs
nj_list = []
self.complete_List = common._db.nJobs('list')
if type == 1:
self.nj_list = []
if self.chosenJobsList: self.nj_list = self.chosenJobsList
return
# build job list
from WMCore.SiteScreening.BlackWhiteListParser import SEBlackWhiteListParser
self.blackWhiteListParser = SEBlackWhiteListParser(
self.seWhiteList, self.seBlackList, common.logger())
common.logger.debug('nsjobs ' + str(self.nsjobs))
# get the first not already submitted
common.logger.debug('Total jobs ' + str(len(self.complete_List)))
jobSetForSubmission = 0
jobSkippedInSubmission = []
tmp_jList = self.complete_List
if self.chosenJobsList != None:
tmp_jList = self.chosenJobsList
for job in common._db.getTask(tmp_jList).jobs:
cleanedBlackWhiteList = self.blackWhiteListParser.cleanForBlackWhiteList(
job['dlsDestination'])
if (cleanedBlackWhiteList != '') or (self.datasetPath == None):
#if ( job.runningJob['status'] in ['C','RC'] and job.runningJob['statusScheduler'] in ['Created',None]):
if (job.runningJob['state'] in ['Created']):
jobSetForSubmission += 1
nj_list.append(job['id'])
else:
continue
else:
jobSkippedInSubmission.append(job['id'])
if self.nsjobs > 0 and self.nsjobs == jobSetForSubmission:
break
pass
if self.nsjobs > jobSetForSubmission:
common.logger.info('asking to submit '+str(self.nsjobs)+' jobs, but only '+\
str(jobSetForSubmission)+' left: submitting those')
if len(jobSkippedInSubmission) > 0:
mess = ""
for jobs in jobSkippedInSubmission:
mess += str(jobs) + ","
common.logger.info(
"Jobs: " + str(mess) +
"\n\tskipped because no sites are hosting this data\n")
self.submissionError()
pass
# submit N from last submitted job
common.logger.debug('nj_list ' + str(nj_list))
self.nj_list = nj_list
if self.limitJobs and len(self.nj_list) > 500:
###### FEDE FOR BUG 85243 ##############
msg = "The CRAB client will not submit task with more than 500 jobs.\n"
msg += " Use the server mode or submit your jobs in smaller groups"
raise CrabException(msg)
########################################
return
def __init__(self, name, server_creator, *server_creator_args):
if server_creator is None:
raise Exception("%s creator is None" % name)
self._log = common.logger(name)
self._name = name
self._server_creator = server_creator
self._server_creator_args = server_creator_args
self._pid = None
self._released_event = multiprocessing.Event()
def generate(txt, mode, N):
"""
generate Training Data for LEVEL-2: patches around landmarks
mode: train or validate
"""
assert (mode == 'train')
#从txt文件中获取数据
data = getDataFromTxt(txt, True,
True) #return [(image_path,landmarks,bbox)]
#用defaultdict存储数据
trainData = defaultdict(lambda: dict(landmarks=[], patches=[], label=[]))
logger(
"generate 25 positive samples and 500 negative samples for per landmark"
)
#产生正负训练样本
trainData = generateSamples(trainData, data)
print 'All data:' + str(len(trainData))
#print trainData['L1']
#arr = []
for idx, name in types: #19个点
logger('writing training data of %s' % name)
patches = np.asarray(trainData[name]['patches'])
landmarks = np.asarray(trainData[name]['landmarks'])
label = np.asarray(trainData[name]['label'])
#arr1 = landmarks.reshape(1,-1)
#arr.append(arr1)
patches = processImage(patches)
shuffle_in_unison_scary(patches, landmarks, label)
#将训练数据保存为hdf5格式
with h5py.File('train/2_%s/%s.h5' % (name, mode), 'w') as h5:
h5['data'] = patches.astype(np.float32)
h5['landmark'] = landmarks.astype(np.float32)
h5['label'] = label.astype(np.uint8)
with open('train/2_%s/%s.txt' % (name, mode), 'w') as fd:
fd.write('train/2_%s/%s.h5' % (name, mode))
#暂时只产生一个点的数据
if idx == 1:
break
def set_driver():
# Set driver
common.logger("Setting up browser driver...")
chrome_options = webdriver.ChromeOptions()
chrome_options.headless = True
# chrome_options.add_argument('--headless')
chrome_options.add_argument('--disable-gpu')
chrome_options.add_argument(
'blink-settings=imagesEnabled==false') # Not loading images
chrome_options.add_argument(
'--log-level=3') # Disable logs issued by Chrome
chrome_options.add_argument(f"user-agent={data.headers['User-Agent']}")
driver = None
if 'Windows' in platform.system():
driver = webdriver.Chrome(executable_path='venv\chromedriver.exe',
options=chrome_options)
data.driver = driver
common.logger("Driver is set! \n")
def generateSamples(testData,data,landmarks):
for (imgPath,bbox) in data:
img = cv2.imread(imgPath,cv2.CV_LOAD_IMAGE_GRAYSCALE)
assert(img is not None)
logger('process %s' % imgPath)
height,width = img.shape[:2]
#downsampled by 3: 3X3 Patch
#size = (int(width/3),int(height/3))
size = (width,height)#不进行下采样
img = cv2.resize(img,size,interpolation=cv2.INTER_NEAREST)
testData = getData(testData,landmarks,img)#test此时为一个字典，存储样本点和对应的图像块
print ('After getting raw data,there are %d datas') % len(testData)
for idx,landmark in enumerate(landmarks):
# 产生样本点 samples
landmark_samples = randomShiftWithArgument(landmark,0,100,150)
testData = getData(testData,landmark_samples,img)
return testData
def __send_snippet(sc, text, channel, thread_ts="", initial_comment='', title='-'):
# Required slackclient, channel, thread_ts
# thread_ts if this is a thread response
logger('info', initial_comment)
try:
res = sc.api_call('files.upload',
channels=channel,
content=text,
initial_comment=initial_comment,
title=title,
thread_ts=thread_ts)
logger('info', res)
if res['ok'] != "True":
logger("warn", "Error: __send_snippet API Error: %s" % res['error'])
# KeyError is not going through logger, debug it
except KeyError as e:
logger("ignore", str(e) + " error in __send_snippet.")
except Exception as e:
logger("warn", "Unknown error in __send_snippet: " + str(e))
def __init__(self, cfg_params, nj_list):
self.cfg_params = cfg_params
self.nj_list = nj_list
from WMCore.SiteScreening.BlackWhiteListParser import SEBlackWhiteListParser
seWhiteList = cfg_params.get('GRID.se_white_list',[])
seBlackList = cfg_params.get('GRID.se_black_list',[])
self.blackWhiteListParser = SEBlackWhiteListParser(seWhiteList, seBlackList, common.logger())
self.datasetpath=self.cfg_params['CMSSW.datasetpath']
if string.lower(self.datasetpath)=='none':
self.datasetpath = None
return
def __init__(self, cfg_params, nj_list):
self.cfg_params = cfg_params
self.nj_list = nj_list
from WMCore.SiteScreening.BlackWhiteListParser import SEBlackWhiteListParser
seWhiteList = cfg_params.get('GRID.se_white_list', [])
seBlackList = cfg_params.get('GRID.se_black_list', [])
self.blackWhiteListParser = SEBlackWhiteListParser(
seWhiteList, seBlackList, common.logger())
self.datasetpath = self.cfg_params['CMSSW.datasetpath']
if string.lower(self.datasetpath) == 'none':
self.datasetpath = None
return
def E(level=1):
if level == 1:
from common import level1 as P
elif level == 2:
from common import level2 as P
data = getDataFromTxt(TXT)
error = np.zeros((len(data), 19))
for i in range(len(data)):
imgPath, bbox, landmarkGt = data[i]
img = cv2.imread(imgPath, cv2.CV_LOAD_IMAGE_GRAYSCALE)
assert (img is not None)
logger("process %s" % imgPath)
landmarkP = P(img, bbox)
#real landmark
landmarkP = bbox.reprojectLandmark(landmarkP)
landmarkGt = bbox.reprojectLandmark(landmarkGt)
error[i] = evaluateError(landmarkGt, landmarkP, bbox)
return error
def __send_ephemeral(sc, text, channel, caller):
try:
res = sc.api_call('chat.postEphemeral',
as_user="******",
channel=channel,
user=caller,
text=text)
if res['ok'] != "True":
logger("warn", "Error: __send_ephemeral API Error: %s" % res['error'])
logger('info', res)
except KeyError as e:
logger("ignore", str(e) + " error in __send_ephemeral.")
except Exception as e:
logger("warn", "Unknown error in __send_ephemeral: " + str(e))
def main():
pointfiledir = os.path.join(dirname, 'AnnotationByMD/400_senior/')
imgdir = os.path.join(dirname, 'TrainData')
logger("generate active shape model!!")
shapes = PointsReader.read_directory(pointfiledir)
asm = ActiveShapeModel(shapes)
logger("draw model fitter on the given images!")
for i in range(1, 2):
s = str(i).zfill(3) + '.bmp'
# load the image
img = cv2.imread(os.path.join(imgdir, s), cv2.CV_LOAD_IMAGE_GRAYSCALE)
model = ModelFitter(asm, img)
ShapeViewer.draw_model_fitter(model)
for j in range(100):
model.do_iteration(0)
ShapeViewer.draw_model_fitter(model)
def generate(ftxt, mode, argument=False):
"""
Generate Training Data for LEVEL-3
mode = train or test
"""
data = getDataFromTxt(ftxt)
trainData = defaultdict(lambda: dict(patches=[], landmarks=[]))
for (imgPath, bbox, landmarkGt) in data:
img = cv2.imread(imgPath, cv2.CV_LOAD_IMAGE_GRAYSCALE)
assert(img is not None)
logger("process %s" % imgPath)
landmarkPs = randomShiftWithArgument(landmarkGt, 0.01)
if not argument:
landmarkPs = [landmarkPs[0]]
for landmarkP in landmarkPs:
for idx, name, padding in types:
patch, patch_bbox = getPatch(img, bbox, landmarkP[idx], padding)
patch = cv2.resize(patch, (15, 15))
patch = patch.reshape((1, 15, 15))
trainData[name]['patches'].append(patch)
_ = patch_bbox.project(bbox.reproject(landmarkGt[idx]))
trainData[name]['landmarks'].append(_)
for idx, name, padding in types:
logger('writing training data of %s'%name)
patches = np.asarray(trainData[name]['patches'])
landmarks = np.asarray(trainData[name]['landmarks'])
patches = processImage(patches)
shuffle_in_unison_scary(patches, landmarks)
with h5py.File('train/3_%s/%s.h5'%(name, mode), 'w') as h5:
h5['data'] = patches.astype(np.float32)
h5['landmark'] = landmarks.astype(np.float32)
with open('train/3_%s/%s.txt'%(name, mode), 'w') as fd:
fd.write('train/3_%s/%s.h5'%(name, mode))
def ce_list(self):
"""
Returns string with requirement CE related
"""
ceParser = CEBlackWhiteListParser(self.EDG_ce_white_list,
self.EDG_ce_black_list,
common.logger())
req = ''
ce_white_list = []
ce_black_list = []
if self.EDG_ce_white_list:
ce_white_list = ceParser.whiteList()
tmpCe = []
concString = '&&'
for ce in ce_white_list:
tmpCe.append('RegExp("' + string.strip(ce) +
'", other.GlueCEUniqueId)')
if len(tmpCe) == 1:
req += " && (" + concString.join(tmpCe) + ") "
elif len(tmpCe) > 1:
firstCE = 0
for reqTemp in tmpCe:
if firstCE == 0:
req += " && ( (" + reqTemp + ") "
firstCE = 1
elif firstCE > 0:
req += " || (" + reqTemp + ") "
if firstCE > 0:
req += ") "
if self.EDG_ce_black_list:
ce_black_list = ceParser.blackList()
tmpCe = []
concString = '&&'
for ce in ce_black_list:
tmpCe.append('(!RegExp("' + string.strip(ce) +
'", other.GlueCEUniqueId))')
if len(tmpCe): req += " && (" + concString.join(tmpCe) + ") "
# requirement added to skip gliteCE
# not more needed
# req += '&& (!RegExp("blah", other.GlueCEUniqueId))'
retWL = ','.join(ce_white_list)
retBL = ','.join(ce_black_list)
if not retWL:
retWL = None
if not retBL:
retBL = None
return req, retWL, retBL
def __impersonator(sc, text, channel, userpic, username, thread_ts=""):
try:
res = sc.api_call('chat.postMessage',
username=username,
icon_url=userpic,
as_user='******',
channel=channel,
text=text,
thread_ts=thread_ts)
if res['ok'] != "True":
logger("warn", "Error: __impersonator API Error: %s" % res['error'])
logger('info', res)
except KeyError as e:
logger("ignore", str(e) + " error in __impersonator")
except Exception as e:
logger("warn", "Unknown error in __impersonator: " + str(e))
def ce_list(self):
"""
Returns string with requirement CE related
"""
ceParser = CEBlackWhiteListParser(self.EDG_ce_white_list,
self.EDG_ce_black_list, common.logger())
req = ''
ce_white_list = []
ce_black_list = []
if self.EDG_ce_white_list:
ce_white_list = ceParser.whiteList()
tmpCe=[]
concString = '&&'
for ce in ce_white_list:
tmpCe.append('RegExp("' + string.strip(ce) + '", other.GlueCEUniqueId)')
if len(tmpCe) == 1:
req += " && (" + concString.join(tmpCe) + ") "
elif len(tmpCe) > 1:
firstCE = 0
for reqTemp in tmpCe:
if firstCE == 0:
req += " && ( (" + reqTemp + ") "
firstCE = 1
elif firstCE > 0:
req += " || (" + reqTemp + ") "
if firstCE > 0:
req += ") "
if self.EDG_ce_black_list:
ce_black_list = ceParser.blackList()
tmpCe=[]
concString = '&&'
for ce in ce_black_list:
tmpCe.append('(!RegExp("' + string.strip(ce) + '", other.GlueCEUniqueId))')
if len(tmpCe): req += " && (" + concString.join(tmpCe) + ") "
# requirement added to skip gliteCE
# not more needed
# req += '&& (!RegExp("blah", other.GlueCEUniqueId))'
retWL = ','.join(ce_white_list)
retBL = ','.join(ce_black_list)
if not retWL:
retWL = None
if not retBL:
retBL = None
return req, retWL, retBL
def configure(self,cfg_params):
self.cfg_params = cfg_params
self.deep_debug= self.cfg_params.get("USER.deep_debug",'0')
server_check = self.cfg_params.get("CRAB.server_name",None)
if self.deep_debug == '1' and server_check != None :
msg = 'You are asking the deep_debug, but it cannot works using the server.\n'
msg += '\t The functionality will not have effect.'
common.logger.info(msg)
self.schedulerName = self.cfg_params.get("CRAB.scheduler",'') # this should match with the bosslite requirements
self.rb_param_file=''
self.wrapper = cfg_params.get('CRAB.jobtype').upper()+'.sh'
## Add here the map for others Schedulers (LSF/CAF/CondorG)
SchedMap = {'glite': schedulerGlite(),
'condor': 'SchedulerCondor',\
'rcondor': 'SchedulerRcondor',\
'condor_g': 'SchedulerCondorG',\
'glidein': 'SchedulerGlidein',\
'lsf': 'SchedulerLsf',\
'caf': 'SchedulerLsf',\
'sge': 'SchedulerSge',\
'arc': 'SchedulerARC',\
'pbs': 'SchedulerPbs',\
'pbsv2': 'SchedulerPbsv2',\
'pbsv2withsrm':'SchedulerPbsv2withsrm',\
'pbsv2withlstore':'SchedulerPbsv2withlstore',\
}
self.schedulerConfig = common.scheduler.realSchedParams(cfg_params)
self.schedulerConfig['name'] = SchedMap[(self.schedulerName).lower()]
self.schedulerConfig['timeout'] = self.setBliteTimeout()
self.schedulerConfig['skipProxyCheck'] = True
self.schedulerConfig['logger'] = common.logger()
self.session = None
return
def checkProxy(self, minTime=10):
"""
Function to check the Globus proxy.
"""
if (self.proxyValid): return
### Just return if asked to do so
if (self.dontCheckProxy==1):
self.proxyValid=1
return
CredAPI_config = { 'credential':'Proxy',\
'myProxySvr': self.proxyServer, \
'logger': common.logger() \
}
from ProdCommon.Credential.CredentialAPI import CredentialAPI
CredAPI = CredentialAPI(CredAPI_config)
if not CredAPI.checkCredential(Time=int(minTime)) or \
not CredAPI.checkAttribute(group=self.group, role=self.role):
try:
CredAPI.ManualRenewCredential(group=self.group, role=self.role)
except Exception, ex:
raise CrabException(str(ex))
def configure(self, cfg_params):
self.cfg_params = cfg_params
self.deep_debug = self.cfg_params.get("USER.deep_debug", "0")
server_check = self.cfg_params.get("CRAB.server_name", None)
if self.deep_debug == "1" and server_check != None:
msg = "You are asking the deep_debug, but it cannot works using the server.\n"
msg += "\t The functionality will not have effect."
common.logger.info(msg)
self.schedulerName = self.cfg_params.get(
"CRAB.scheduler", ""
) # this should match with the bosslite requirements
self.rb_param_file = ""
self.wrapper = cfg_params.get("CRAB.jobtype").upper() + ".sh"
## Add here the map for others Schedulers (LSF/CAF/CondorG)
SchedMap = {
"glite": schedulerGlite(),
"condor": "SchedulerCondor",
"condor_g": "SchedulerCondorG",
"glidein": "SchedulerGlidein",
"remoteglidein": "SchedulerRemoteglidein",
"lsf": "SchedulerLsf",
"caf": "SchedulerLsf",
"sge": "SchedulerSge",
"arc": "SchedulerARC",
"pbs": "SchedulerPbs",
}
self.schedulerConfig = common.scheduler.realSchedParams(cfg_params)
self.schedulerConfig["name"] = SchedMap[(self.schedulerName).lower()]
self.schedulerConfig["timeout"] = self.setBliteTimeout()
self.schedulerConfig["skipProxyCheck"] = True
self.schedulerConfig["logger"] = common.logger()
self.session = None
return
def ce_list(self):
ceParser = CEBlackWhiteListParser(self.EDG_ce_white_list,
self.EDG_ce_black_list, common.logger())
wl = ','.join(ceParser.whiteList()) or None
bl = ','.join(ceParser.blackList()) or None
return '', wl, bl
def configure(self, cfgParams):
"""
Configure the scheduler with the config settings from the user
"""
# FIXME: Get rid of try/except and use get() instead
if not os.environ.has_key('EDG_WL_LOCATION'):
# This is an ugly hack needed for SchedulerGrid.configure() to
# work!
os.environ['EDG_WL_LOCATION'] = ''
if not os.environ.has_key('X509_USER_PROXY'):
# Set X509_USER_PROXY to the default location. We'll do this
# because in functions called by Scheduler.checkProxy()
# voms-proxy-info will be called with '-file $X509_USER_PROXY',
# so if X509_USER_PROXY isn't set, it won't work.
os.environ['X509_USER_PROXY'] = '/tmp/x509up_u' + str(os.getuid())
SchedulerGrid.configure(self, cfgParams)
if cfgParams.get('CRAB.server_name',None) or cfgParams.get('CRAB.use_server',None):
pass
else:
self.checkCondorSetup()
# init BlackWhiteListParser
ceWhiteList = cfgParams.get('GRID.ce_white_list',[])
ceBlackList = cfgParams.get('GRID.ce_black_list',[])
self.ceBlackWhiteListParser = \
CEBlackWhiteListParser(ceWhiteList, ceBlackList, common.logger())
try:
self.GLOBUS_RSL = cfgParams['CONDORG.globus_rsl']
except KeyError:
self.GLOBUS_RSL = ''
# Provide an override for the batchsystem that condor_g specifies
# as a grid resource. This is to handle the case where the site
# supports several batchsystem but bdii only allows a site
# to public one.
try:
self.batchsystem = cfgParams['CONDORG.batchsystem']
msg = self.msgPre + 'batchsystem overide specified in your crab.cfg'
common.logger.debug(msg)
except KeyError:
self.batchsystem = ''
self.datasetPath = ''
try:
tmp = cfgParams['CMSSW.datasetpath']
if tmp.lower() == 'none':
self.datasetPath = None
self.selectNoInput = 1
else:
self.datasetPath = tmp
self.selectNoInput = 0
except KeyError:
msg = "Error: datasetpath not defined "
raise CrabException(msg)
return
from StringIO import StringIO
from lib import transmissionrpc
import sys, base64, os
torrent_files = sys.argv[1:]
client = get_client()
download_dir = client.session.download_dir
def upload_file(file_path):
output = StringIO()
base64.encode(file(file_path,"rb"), output)
result = client.add(output.getvalue())
logger.log(TorrentAddedEvent(file_path))
remove_files = True
for file_path in torrent_files:
logger(UploadingTorrentEvent(file_path))
try:
upload_file(file_path)
if remove_files: os.remove(file_path)
except transmissionrpc.TransmissionError, e:
if '"duplicate torrent"' in e.message:
if remove_files: os.remove(file_path)
logger.log(DuplicatedTorrent(file_path))
else:
logger.log(Error("Error uploading file", e))
except Exception, e:
logger.log(Error("Error uploading file", e))
bname = profile.bestname()
if not bname.isnumeric():
confirmed_names.append(bname)
confirmed_names = list(set(confirmed_names))
wf = open(namesfile,'w')
for name in confirmed_names:
wf.write('{}\n'.format(n))
wf.close()
logger.info('Wrote {} names to {}'.format(len(confirmed_names), namesfile))
#Set up to download search results.
logger('Initialising expansion DB.')
exp_db = prefix+'expand-db.csv'
exprawdir = prefix+'expand-raw'
expprofdir = prefix+'expand-profiles'
expstore = common.profilestore.ProfileStore(exp_df, logger)
searchers = []
if fbconn:
searchers.append(facebook.search.FacebookSearch(fbconn, expstore, logger))
if gpconn:
searchers.append(gplus.search.GPlusSearch(gpconn, expstore, logger))
if twconn:
searchers.append(twitter.search.TwitterSearch(twconn, expstore, logger))
if liconn:
searchers.append(linkedin.search.LinkedInSearch(expstore, logger))
transmission_home_dir = client.session.download_dir
if not transmission_home_dir.endswith("/"):
transmission_home_dir += "/"
count = 0
for torrent in finished_torrents_with_new_files:
files = [f["name"] for f in client.get_files(torrent.id)[torrent.id].values()
if f["completed"] == f["size"]]
f = file("files_to_download.txt","ab")
for name in files:
full_remote_path = transmission_home_dir+name
local_dir = name.rsplit("/",1)[0]
f.write('!mkdir -p "%s"\n' % local_dir)
f.write('get -c "%s" -o "%s"\n' % (full_remote_path, name))
f.close()
f = file("already_downloaded.txt","a")
f.write(torrent.name+"\n")
f.close()
logger(MarkToDownload(torrent.name))
count += 1
if count == 0:
logger(NoNewTorrents())
f = file("files_to_download.txt","ab")
f.write('!rm files_to_download.txt\n')
f.close()
'''
Example of Usage
'''
import common
from ccrawler import CCrawler, Request
from selector import HtmlSelector
import logging
logger = common.logger(name=__name__, filename='ccrawler.log', level=logging.DEBUG)
class DummySpider:
start_urls = ['http://www.blueidea.com/photo/gallery/']
#start_urls = ['http://disclosure.szse.cn/m/drgg000023.htm', 'http://disclosure.szse.cn/m/drgg000024.htm']
#start_urls = ['http://www.baidu.com', 'http://www.google.com', 'http://www.google.hk']
workers = 100
timeout = 8
def parse(self, response):
hxs = HtmlSelector(response)
'''
Usage re
'''
'''
itemlist = hxs.re('<td class=\'td10\'> .*?<\/td>')
for item in itemlist:
title = item.re('<a[^>]*[^>]*>(.*)[^<]*<\/a>')
print title
'''
from common import level1, level2, level3
TXT = 'dataset/test/lfpw_test_249_bbox.txt'
if __name__ == '__main__':
assert(len(sys.argv) == 2)
level = int(sys.argv[1])
if level == 0:
P = partial(level1, FOnly=True)
elif level == 1:
P = level1
elif level == 2:
P = level2
else:
P = level3
OUTPUT = 'dataset/test/out_{0}'.format(level)
createDir(OUTPUT)
data = getDataFromTxt(TXT, with_landmark=False)
for imgPath, bbox in data:
img = cv2.imread(imgPath)
assert(img is not None)
imgGray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY)
logger("process %s" % imgPath)
landmark = P(imgGray, bbox)
landmark = bbox.reprojectLandmark(landmark)
drawLandmark(img, bbox, landmark)
cv2.imwrite(os.path.join(OUTPUT, os.path.basename(imgPath)), img)
myproxyserver = myproxyserver.strip()
if myproxyserver is None:
raise CrabException("myproxy_server.conf retrieved but empty")
except Exception, e:
common.logger.info("Problem setting myproxy server endpoint: using myproxy.cern.ch")
common.logger.debug(e)
myproxyserver = 'myproxy.cern.ch'
configAPI = {'credential' : self.credentialType, \
'myProxySvr' : myproxyserver,\
'serverDN' : self.server_dn,\
'shareDir' : common.work_space.shareDir() ,\
'userName' : getUserName(),\
'serverName' : self.server_name, \
'proxyPath' : self.proxy_path, \
'logger' : common.logger() \
}
try:
CredAPI = CredentialAPI( configAPI )
except Exception, err :
common.logger.debug("Configuring Credential API: " +str(traceback.format_exc()))
raise CrabException("ERROR: Unable to configure Credential Client API %s\n"%str(err))
if self.credentialType == 'Proxy':
# Proxy delegation through MyProxy, 4 days lifetime minimum
if not CredAPI.checkMyProxy(Time=4, checkRetrieverRenewer=True) :
common.logger.info("Please renew MyProxy delegated proxy:\n")
try:
CredAPI.credObj.serverDN = self.server_dn
def __init__( self, cfg_params, args ):
self.cfg_params = cfg_params
self.args=args
self.lumisPerJob = -1
self.totalNLumis = 0
self.theNumberOfJobs = 0
self.limitNJobs = False
self.limitTotalLumis = False
self.limitJobLumis = False
#self.maxEvents
# init BlackWhiteListParser
self.seWhiteList = cfg_params.get('GRID.se_white_list',[])
if type(self.seWhiteList) == type("string"):
self.seWhiteList = self.seWhiteList.split(',')
seBlackList = cfg_params.get('GRID.se_black_list',[])
if type(seBlackList) == type("string"):
seBlackList = seBlackList.split(',')
if common.scheduler.name().upper() == 'REMOTEGLIDEIN' :
# use central black list
removeBList = cfg_params.get("GRID.remove_default_blacklist", 0 )
blackAnaOps = None
if int(removeBList) == 0:
blacklist = Downloader("http://cmsdoc.cern.ch/cms/LCG/crab/config/")
result = blacklist.config("site_black_list.conf").strip().split(',')
if result != None:
blackAnaOps = result
common.logger.debug("Enforced black list: %s "%blackAnaOps)
else:
common.logger.info("WARNING: Skipping default black list!")
if int(removeBList) == 0 and blackAnaOps:
seBlackList += blackAnaOps
self.blackWhiteListParser = SEBlackWhiteListParser(self.seWhiteList, seBlackList, common.logger())
if seBlackList != []:
common.logger.info("SE black list applied to data location: %s" %\
seBlackList)
if self.seWhiteList != []:
common.logger.info("SE white list applied to data location: %s" %\
self.seWhiteList)
# apply BW list
blockSites=args['blockSites']
common.logger.debug("List of blocks and used locations (SE):")
for block,dlsDest in blockSites.iteritems():
noBsites=self.blackWhiteListParser.checkBlackList(dlsDest)
sites=self.blackWhiteListParser.checkWhiteList(noBsites)
if sites : blockSites[block]=sites
common.logger.debug("%s : %s" % (block,sites))
args['blockSites']=blockSites
## check if has been asked for a non default file to store/read analyzed fileBlocks
defaultName = common.work_space.shareDir()+'AnalyzedBlocks.txt'
self.fileBlocks_FileName = os.path.abspath(self.cfg_params.get('CMSSW.fileblocks_file',defaultName))
def BuildJobList(self,type=0):
# total jobs
nj_list = []
self.complete_List = common._db.nJobs('list')
if type==1:
self.nj_list =[]
if self.chosenJobsList: self.nj_list = self.chosenJobsList
return
# build job list
from WMCore.SiteScreening.BlackWhiteListParser import SEBlackWhiteListParser
self.blackWhiteListParser = SEBlackWhiteListParser(self.seWhiteList, self.seBlackList, common.logger())
common.logger.debug('nsjobs '+str(self.nsjobs))
# get the first not already submitted
common.logger.debug('Total jobs '+str(len(self.complete_List)))
jobSetForSubmission = 0
jobSkippedInSubmission = []
tmp_jList = self.complete_List
if self.chosenJobsList != None:
tmp_jList = self.chosenJobsList
for job in common._db.getTask(tmp_jList).jobs:
cleanedBlackWhiteList = self.blackWhiteListParser.cleanForBlackWhiteList(job['dlsDestination'])
if (cleanedBlackWhiteList != '') or (self.datasetPath == None):
#if ( job.runningJob['status'] in ['C','RC'] and job.runningJob['statusScheduler'] in ['Created',None]):
if ( job.runningJob['state'] in ['Created']):
jobSetForSubmission +=1
nj_list.append(job['id'])
else:
continue
else :
jobSkippedInSubmission.append( job['id'] )
if self.nsjobs >0 and self.nsjobs == jobSetForSubmission:
break
pass
if self.nsjobs>jobSetForSubmission:
common.logger.info('asking to submit '+str(self.nsjobs)+' jobs, but only '+\
str(jobSetForSubmission)+' left: submitting those')
if len(jobSkippedInSubmission) > 0 :
mess =""
for jobs in jobSkippedInSubmission:
mess += str(jobs) + ","
common.logger.info("Jobs: " +str(mess) + "\n\tskipped because no sites are hosting this data\n")
self.submissionError()
pass
# submit N from last submitted job
common.logger.debug('nj_list '+str(nj_list))
self.nj_list = nj_list
if self.limitJobs and len(self.nj_list) > 500:
###### FEDE FOR BUG 85243 ##############
msg = "The CRAB client will not submit task with more than 500 jobs.\n"
msg += " Use the server mode or submit your jobs in smaller groups"
raise CrabException(msg)
########################################
return
def generate_hdf5(ftxt, output, fname, argument=False):
data = getDataFromTxt(ftxt)
F_imgs = []
F_landmarks = []
EN_imgs = []
EN_landmarks = []
NM_imgs = []
NM_landmarks = []
for (imgPath, bbox, landmarkGt) in data:
img = cv2.imread(imgPath, cv2.CV_LOAD_IMAGE_GRAYSCALE)
assert(img is not None)
logger("process %s" % imgPath)
# F
f_bbox = bbox.subBBox(-0.05, 1.05, -0.05, 1.05)
f_face = img[f_bbox.top:f_bbox.bottom+1,f_bbox.left:f_bbox.right+1]
## data argument
if argument and np.random.rand() > -1:
### flip
face_flipped, landmark_flipped = flip(f_face, landmarkGt)
face_flipped = cv2.resize(face_flipped, (39, 39))
F_imgs.append(face_flipped.reshape((1, 39, 39)))
F_landmarks.append(landmark_flipped.reshape(10))
### rotation
if np.random.rand() > 0.5:
face_rotated_by_alpha, landmark_rotated = rotate(img, f_bbox, \
bbox.reprojectLandmark(landmarkGt), 5)
landmark_rotated = bbox.projectLandmark(landmark_rotated)
face_rotated_by_alpha = cv2.resize(face_rotated_by_alpha, (39, 39))
F_imgs.append(face_rotated_by_alpha.reshape((1, 39, 39)))
F_landmarks.append(landmark_rotated.reshape(10))
### flip with rotation
face_flipped, landmark_flipped = flip(face_rotated_by_alpha, landmark_rotated)
face_flipped = cv2.resize(face_flipped, (39, 39))
F_imgs.append(face_flipped.reshape((1, 39, 39)))
F_landmarks.append(landmark_flipped.reshape(10))
### rotation
if np.random.rand() > 0.5:
face_rotated_by_alpha, landmark_rotated = rotate(img, f_bbox, \
bbox.reprojectLandmark(landmarkGt), -5)
landmark_rotated = bbox.projectLandmark(landmark_rotated)
face_rotated_by_alpha = cv2.resize(face_rotated_by_alpha, (39, 39))
F_imgs.append(face_rotated_by_alpha.reshape((1, 39, 39)))
F_landmarks.append(landmark_rotated.reshape(10))
### flip with rotation
face_flipped, landmark_flipped = flip(face_rotated_by_alpha, landmark_rotated)
face_flipped = cv2.resize(face_flipped, (39, 39))
F_imgs.append(face_flipped.reshape((1, 39, 39)))
F_landmarks.append(landmark_flipped.reshape(10))
f_face = cv2.resize(f_face, (39, 39))
en_face = f_face[:31, :]
nm_face = f_face[8:, :]
f_face = f_face.reshape((1, 39, 39))
f_landmark = landmarkGt.reshape((10))
F_imgs.append(f_face)
F_landmarks.append(f_landmark)
# EN
# en_bbox = bbox.subBBox(-0.05, 1.05, -0.04, 0.84)
# en_face = img[en_bbox.top:en_bbox.bottom+1,en_bbox.left:en_bbox.right+1]
## data argument
if argument and np.random.rand() > 0.5:
### flip
face_flipped, landmark_flipped = flip(en_face, landmarkGt)
face_flipped = cv2.resize(face_flipped, (31, 39)).reshape((1, 31, 39))
landmark_flipped = landmark_flipped[:3, :].reshape((6))
EN_imgs.append(face_flipped)
EN_landmarks.append(landmark_flipped)
en_face = cv2.resize(en_face, (31, 39)).reshape((1, 31, 39))
en_landmark = landmarkGt[:3, :].reshape((6))
EN_imgs.append(en_face)
EN_landmarks.append(en_landmark)
# NM
# nm_bbox = bbox.subBBox(-0.05, 1.05, 0.18, 1.05)
# nm_face = img[nm_bbox.top:nm_bbox.bottom+1,nm_bbox.left:nm_bbox.right+1]
## data argument
if argument and np.random.rand() > 0.5:
### flip
face_flipped, landmark_flipped = flip(nm_face, landmarkGt)
face_flipped = cv2.resize(face_flipped, (31, 39)).reshape((1, 31, 39))
landmark_flipped = landmark_flipped[2:, :].reshape((6))
NM_imgs.append(face_flipped)
NM_landmarks.append(landmark_flipped)
nm_face = cv2.resize(nm_face, (31, 39)).reshape((1, 31, 39))
nm_landmark = landmarkGt[2:, :].reshape((6))
NM_imgs.append(nm_face)
NM_landmarks.append(nm_landmark)
#imgs, landmarks = process_images(ftxt, output)
F_imgs, F_landmarks = np.asarray(F_imgs), np.asarray(F_landmarks)
EN_imgs, EN_landmarks = np.asarray(EN_imgs), np.asarray(EN_landmarks)
NM_imgs, NM_landmarks = np.asarray(NM_imgs),np.asarray(NM_landmarks)
F_imgs = processImage(F_imgs)
shuffle_in_unison_scary(F_imgs, F_landmarks)
EN_imgs = processImage(EN_imgs)
shuffle_in_unison_scary(EN_imgs, EN_landmarks)
NM_imgs = processImage(NM_imgs)
shuffle_in_unison_scary(NM_imgs, NM_landmarks)
# full face
base = join(OUTPUT, '1_F')
createDir(base)
output = join(base, fname)
logger("generate %s" % output)
with h5py.File(output, 'w') as h5:
h5['data'] = F_imgs.astype(np.float32)
h5['landmark'] = F_landmarks.astype(np.float32)
# eye and nose
base = join(OUTPUT, '1_EN')
createDir(base)
output = join(base, fname)
logger("generate %s" % output)
with h5py.File(output, 'w') as h5:
h5['data'] = EN_imgs.astype(np.float32)
h5['landmark'] = EN_landmarks.astype(np.float32)
# nose and mouth
base = join(OUTPUT, '1_NM')
createDir(base)
output = join(base, fname)
logger("generate %s" % output)
with h5py.File(output, 'w') as h5:
h5['data'] = NM_imgs.astype(np.float32)
h5['landmark'] = NM_landmarks.astype(np.float32)
def __init__( self, cfg_params, args ):
self.cfg_params = cfg_params
self.args=args
self.lumisPerJob = -1
self.totalNLumis = 0
self.theNumberOfJobs = 0
self.limitNJobs = False
self.limitTotalLumis = False
self.limitJobLumis = False
#self.maxEvents
# init BlackWhiteListParser
self.seWhiteList = cfg_params.get('GRID.se_white_list',[])
seBlackList = cfg_params.get('GRID.se_black_list',[])
self.blackWhiteListParser = SEBlackWhiteListParser(self.seWhiteList, seBlackList, common.logger())
## check if has been asked for a non default file to store/read analyzed fileBlocks
defaultName = common.work_space.shareDir()+'AnalyzedBlocks.txt'
self.fileBlocks_FileName = os.path.abspath(self.cfg_params.get('CMSSW.fileblocks_file',defaultName))
self.global_data_service = int( self.cfg_params.get('CMSSW.global_data_service', 0) )
self.global_data_rewrite = int( self.cfg_params.get('CMSSW.global_data_rewrite', 1) )
def configure(self, cfg_params):
self._boss.configure(cfg_params)
self.CRAB_useServer = cfg_params.get('CRAB.use_server',0)
self.CRAB_serverName = cfg_params.get('CRAB.server_name',None)
seWhiteList = cfg_params.get('GRID.se_white_list',[])
seBlackList = cfg_params.get('GRID.se_black_list',[])
self.dontCheckMyProxy=int(cfg_params.get("GRID.dont_check_myproxy",0))
self.EDG_requirements = cfg_params.get('GRID.requirements',None)
self.EDG_addJdlParam = cfg_params.get('GRID.additional_jdl_parameters',None)
if (self.EDG_addJdlParam):
self.EDG_addJdlParam = string.split(self.EDG_addJdlParam,';')
self.pset = cfg_params.get('CMSSW.pset',None)
self.blackWhiteListParser = SEBlackWhiteListParser(seWhiteList, seBlackList, common.logger())
self.return_data = int(cfg_params.get('USER.return_data',0))
self.copy_data = int(cfg_params.get('USER.copy_data',0))
self.publish_data = cfg_params.get("USER.publish_data",0)
self.local_stage = int(cfg_params.get('USER.local_stage_out',0))
self.check_RemoteDir = int(cfg_params.get('USER.check_user_remote_dir',1))
if int(self.copy_data) == 1:
self.SE = cfg_params.get('USER.storage_element',None)
if not self.SE:
msg = "Error. The [USER] section does not have 'storage_element'"
common.logger.info(msg)
raise CrabException(msg)
if ( int(self.return_data) == 0 and int(self.copy_data) == 0 ):
msg = 'Error: return_data = 0 and copy_data = 0 ==> your exe output will be lost\n'
msg = msg + 'Please modify return_data and copy_data value in your crab.cfg file\n'
raise CrabException(msg)
if ( int(self.return_data) == 1 and int(self.copy_data) == 1 ):
msg = 'Error: return_data and copy_data cannot be set both to 1\n'
msg = msg + 'Please modify return_data or copy_data value in your crab.cfg file\n'
raise CrabException(msg)
if ( int(self.copy_data) == 0 and int(self.local_stage) == 1 ):
msg = 'Error: copy_data = 0 and local_stage_out = 1.\n'
msg += 'To enable local stage out the copy_data value has to be = 1\n'
msg = msg + 'Please modify copy_data value in your crab.cfg file\n'
raise CrabException(msg)
if ( int(self.copy_data) == 0 and int(self.publish_data) == 1 ):
msg = 'Error: publish_data = 1 must be used with copy_data = 1\n'
msg = msg + 'Please modify copy_data value in your crab.cfg file\n'
common.logger.info(msg)
raise CrabException(msg)
if ( int(self.publish_data) == 1 and self._name == 'lsf'):
msg = 'Error: data publication is not allowed with lsf scheduler, but only with grid scheduler or caf\n'
common.logger.info(msg)
raise CrabException(msg)
self.debug_wrapper = int(cfg_params.get('USER.debug_wrapper',0))
self.debugWrap=''
if self.debug_wrapper==1: self.debugWrap='--debug'
self.loc_stage_out = ''
if ( int(self.local_stage) == 1 ):
self.debugWrap='--debug'
self.loc_stage_out='--local_stage'
# Time padding for minimal job duration.
self.minimal_job_duration = 10
return