def list_samples(args):
sample_config_file_path = args.config
config = SamplesConfig(sample_config_file_path)
for sample in config.list_sample_names():
print(sample)
print(config.list_sample_names())
def list_mates_to_align(self):
cnfg = SamplesConfig("Config/samples_config.yaml")
mates_to_align = [Mate.from_dict(mate) for mate in cnfg.list_mates()]
mates_to_align = filter(lambda x: x.align, mates_to_align)
return mates_to_align