def test_bout_num1(self):
"""Assures that Behavior.bout_num() works with bouts."""
behav1 = behavior.Behavior('b1', 10, [5], [10])
self.assertEqual(behav1.bout_num(), 1)
behav2 = behavior.Behavior('b2', 10, [2, 6, 8], [3, 7, 10])
self.assertEqual(behav2.bout_num(), 3)
def test_bout_durations1(self):
"""Assures that Behavior.bout_durations() works with bouts."""
behav1 = behavior.Behavior('b1', 10, [5], [10])
np.testing.assert_array_equal(behav1.bout_durations(), [5])
behav2 = behavior.Behavior('b2', 10, [2, 6, 8], [3, 7, 10])
np.testing.assert_array_equal(behav2.bout_durations(), [1, 1, 2])
def test_index1(self):
"""Assures Behavior.index() `mode`s 'all' and 'condensed' works with
bouts present."""
behav1 = behavior.Behavior('b1', 100, [20, 80], [40, 100])
self.assertEqual(behav1.index(mode='all'), 0.4)
self.assertEqual(behav1.index(mode='condensed'), 0.5)
behav2 = behavior.Behavior('b2', 10, [4, 8], [5, 10])
self.assertEqual(behav2.index(mode='all'), 0.3)
self.assertEqual(behav2.index(mode='condensed'), 0.5)
behav3 = behavior.Behavior('b3', 10, [5], [10])
self.assertEqual(behav3.index(mode='all'), 0.5)
self.assertEqual(behav3.index(mode='condensed'), 1)
def test_init1(self):
"""Assures attributes are set given an normal initialization."""
behav1 = behavior.Behavior('behavior_1', 100, [50, 70], [60, 80])
np.testing.assert_array_equal(behav1.start_ixs, np.array([50, 70]))
np.testing.assert_array_equal(behav1.stop_ixs, np.array([60, 80]))
self.assertEqual(behav1.name, 'behavior_1')
self.assertEqual(behav1.length, 100)
def test_ixs1(self):
"""Assures Behavior.ixs() returns expected array given start/stop
indices upon initialization."""
start_ixs = [20, 40, 60]
stop_ixs = [30, 50, 70]
behav = behavior.Behavior('behavior1', 100, start_ixs, stop_ixs)
np.testing.assert_array_equal(behav.ixs(),
np.array([start_ixs, stop_ixs]).T)
def test_as_array2(self):
"""Assures Behavior.as_array() works with empty behavior."""
behav = behavior.Behavior('b1', 100, [], [])
np.testing.assert_array_equal(behav.as_array(), np.zeros(100))
def test_as_array1(self):
"""Assures Behavior.as_array() works with non-empty behavior."""
behav = behavior.Behavior('b1', 10, [2, 8], [4, 10])
np.testing.assert_array_equal(behav.as_array(),
[0, 0, 1, 1, 0, 0, 0, 0, 1, 1])
def test_ixs2(self):
"""Assures Behavior.ixs() returns expected array given empty start/stop
indices upon initialization."""
behav = behavior.Behavior('b1', 100, [], [])
self.assertEqual(behav.ixs().size, 0)
np.testing.assert_array_equal(behav.ixs().shape, (0, 2))
def test_init3(self):
"""Assures that start indices longer than `length` are truncated."""
behav = behavior.Behavior('b1', 100, [50, 80, 120], [60, 100, 140])
np.testing.assert_array_equal(behav.start_ixs, [50, 80])
np.testing.assert_array_equal(behav.stop_ixs, [60, 100])
def test_bout_durations2(self):
"""Assures that Behavior.bout_durations() works with no bouts."""
behav1 = behavior.Behavior('b1', 10, [], [])
np.testing.assert_array_equal(behav1.bout_durations(), [])
def test_bout_num2(self):
"""Assures that Behavior.bout_num() works with no bouts."""
behav1 = behavior.Behavior('b1', 10, [], [])
self.assertEqual(behav1.bout_num(), 0)
def test_latency2(self):
"""Assures that Behavior.latency() works with no bouts."""
behav = behavior.Behavior('b', 10, [], [])
self.assertEqual(behav.latency(), 10)
def test_latency1(self):
"""Assures that Behavior.latency() works with bouts."""
behav = behavior.Behavior('b', 10, [5], [10])
self.assertEqual(behav.latency(), 5)
def test_index2(self):
"""Assures Behavior.index() `mode`s 'all' and 'condensed' works with
no bouts present."""
behav = behavior.Behavior('b1', 10, [], [])
self.assertEqual(behav.index(mode='all'), 0)
self.assertEqual(behav.index(mode='condensed'), 0)