def _getIterData(self, it, **kwargs):
""" Sort the it??.data.star file by the maximum likelihood. """
data_sqlite = self._getFileName('data_scipion', iter=it)
if not exists(data_sqlite):
data = self._getFileName('data', iter=it)
writeSqliteIterData(data, data_sqlite, **kwargs)
return data_sqlite
def _getIterData(self, it):
from convert import writeSqliteIterData
data_sqlite = self._getFileName('data_scipion', iter=it)
partSet = self._getInputParticles()
if not exists(data_sqlite):
clsFn = self._getFileName("cls", run=self._getRun(), iter=it)
classesFn = self._getFileName("classes", run=self._getRun(), iter=it)
angles = self._getBaseName('angles', iter=it)
proc = createEmanProcess(args='read %s %s %s %s'
% (self._getParticlesStack(), clsFn, classesFn, angles),
direc=self._getExtraPath())
proc.wait()
writeSqliteIterData(partSet, data_sqlite, self._createItemMatrix, self._iterTextFile(it))
return data_sqlite
