def makeRScript(self, client):
remotedir=self.controller.goodName(self.directory).split('/')[-1]
self.controller.getParameters()
model = MSIntegrationModel(self.controller.model, **self.controller.parameters)
code=model.makeRscript((self.dir, remotedir), self.selectedFiles)
with open(self.XCMS_SCRIPT, 'w') as f:
f.write(code)
print "putting new script"
user = str(self.username.text())
sftp=client.open_sftp()
sftp.put(self.XCMS_SCRIPT, "".join(['/work/',user, '/', self.XCMS_SCRIPT]))
sftp.close()
def makeRScript(self, client):
remotedir = self.controller.goodName(self.directory).split('/')[-1]
self.controller.getParameters()
model = MSIntegrationModel(self.controller.model,
**self.controller.parameters)
code = model.makeRscript((self.dir, remotedir), self.selectedFiles)
with open(self.XCMS_SCRIPT, 'w') as f:
f.write(code)
print "putting new script"
user = str(self.username.text())
sftp = client.open_sftp()
sftp.put(self.XCMS_SCRIPT,
"".join(['/work/', user, '/', self.XCMS_SCRIPT]))
sftp.close()
def run(self):
integrator = MSIntegrationModel(self.lspl, parent=self)
self.emit(SIGNAL("status_message"), "Getting peaks from xcms...")
integrator.integrateWithR(**self.kw)
def run(self):
integrator = MSIntegrationModel(self.lspl, parent=self)
self.emit(SIGNAL("status_message"), "Getting peaks from xcms...")
integrator.integrateWithR(**self.kw)