def test_write_seq(self) :
f = StringIO(ig_io.example)
seqs = ig_io.read(f)
fout = StringIO()
ig_io.write(fout,seqs)
fout.seek(0)
seqs2 = ig_io.read(fout)
self.assertEqual(seqs, seqs2)
def test_read(self) :
f = StringIO(ig_io.example)
seqs = ig_io.read(f)
self.assertEqual(len(seqs), 2)
self.assertEqual(seqs[0].description, "H.sapiens fau mRNA, 518 bases")
self.assertEqual(seqs[1].name, "HSFAU1")
self.assertEqual(len(seqs[1]), 299)
def test_read2(self):
f = testdata_stream("intelligenetics.txt")
seqs = ig_io.read(f)
self.assertEqual(len(seqs[0]), 518)
self.assertEqual(len(seqs[1]), 2016)
f.close()