def test_utils_help(args, capsys, platform):
argv = ['cpac', *args.split(' '), 'group', '--help']
with mock.patch.object(sys, 'argv', [arg for arg in argv if len(arg)]):
run()
captured = capsys.readouterr()
assert platform.title() in captured.out
assert 'COMMAND' in captured.out
def test_run_test_config(args, tmp_path):
wd = tmp_path
argv = (f'cpac {args} run '
f's3://fcp-indi/data/Projects/ABIDE/RawDataBIDS/NYU {wd} '
'test_config --participant_ndx=2').split(' ')
with mock.patch.object(sys, 'argv', argv):
run()
assert (any([date.today().isoformat() in fp for fp in os.listdir(wd)]))
def test_utils_new_settings_template(args, tmp_path):
wd = tmp_path
argv = (f'cpac {args} --working_dir {wd} --temp_dir {wd} '
f'utils data_config new_settings_template').split(' ')
with mock.patch.object(sys, 'argv', argv):
run()
template_path = os.path.join(wd, 'data_settings.yml')
assert (os.path.exists(template_path))
def test_cpac_crash(args, capsys):
crashfile = os.path.join(
os.path.dirname(__file__), 'test_data', 'test_pickle.pklz'
)
argv = (
f'cpac {args} crash {crashfile}'
).split(' ')
with mock.patch.object(sys, 'argv', argv):
run()
captured = capsys.readouterr()
assert("MemoryError" in captured.out or "MemoryError" in captured.err)
def test_run_help(args, capsys, helpflag):
argv = ['cpac', *args.split(' '), 'run', helpflag]
with mock.patch.object(sys, 'argv', argv):
run()
captured = capsys.readouterr()
assert 'participant' in captured.out or 'participant' in captured.err