Beispiel #1
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def test_hamming_sphere_explicit():
    assert list(hamming_sphere('', 0)) == ['']
    assert list(hamming_sphere('A', 0)) == ['A']
    assert list(hamming_sphere('A', 1)) == ['C', 'G', 'T']
    assert list(hamming_sphere('GTC', 0)) == ['GTC']
    assert list(hamming_sphere('GTC', 1)) == [
        'ATC', 'CTC', 'TTC', 'GAC', 'GCC', 'GGC', 'GTA', 'GTG', 'GTT']
Beispiel #2
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def test_hamming_sphere_explicit():
    assert list(hamming_sphere('', 0)) == ['']
    assert list(hamming_sphere('A', 0)) == ['A']
    assert list(hamming_sphere('A', 1)) == ['C', 'G', 'T']
    assert list(hamming_sphere('GTC', 0)) == ['GTC']
    assert list(hamming_sphere('GTC', 1)) == [
        'ATC', 'CTC', 'TTC', 'GAC', 'GCC', 'GGC', 'GTA', 'GTG', 'GTT'
    ]
Beispiel #3
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def test_hamming_sphere(sk):
    s, k = sk
    result = list(hamming_sphere(s, k))
    result_set = set(result)
    assert len(result) == len(result_set)
    assert len(result) == 3**k * binomial(len(s), k)
    for t in result:
        assert hamming_distance(s, t) == k
Beispiel #4
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def test_hamming_sphere(sk):
    s, k = sk
    result = list(hamming_sphere(s, k))
    result_set = set(result)
    assert len(result) == len(result_set)
    assert len(result) == 3 ** k * binomial(len(s), k)
    for t in result:
        assert hamming_distance(s, t) == k