def testRequiredFields(self): required = MicrobTranscriptomicsRawSeqSet.required_fields() self.assertEqual(type(required), tuple, "required_fields() returns a tuple.") self.assertTrue(len(required) > 0, "required_fields() did not return empty value.")
def testRequiredFields(self): """ Test the required_fields() static method. """ required = MicrobTranscriptomicsRawSeqSet.required_fields() self.assertEqual(type(required), tuple, "required_fields() returns a tuple.") self.assertTrue(len(required) > 0, "required_fields() did not return empty value.")
def set_logging(): """ Setup logging. """ root = logging.getLogger() root.setLevel(logging.DEBUG) ch = logging.StreamHandler(sys.stdout) ch.setLevel(logging.DEBUG) formatter = logging.Formatter('%(asctime)s - %(name)s - %(levelname)s - %(message)s') ch.setFormatter(formatter) root.addHandler(ch) set_logging() session = iHMPSession(username, password) print("Required fields: ") print(MicrobTranscriptomicsRawSeqSet.required_fields()) mtrss = MicrobTranscriptomicsRawSeqSet() mtrss.checksums = {"md5": "72bdc024d83226ccc90fbd2177e78d56"} mtrss.study = "prediabetes" print("Creating a temp file for example/testing purposes.") temp_file = tempfile.NamedTemporaryFile(delete=False).name print("Local file: %s" % temp_file) mtrss.local_file = temp_file mtrss.size = 13131 mtrss.seq_model = "test sequencer model" mtrss.exp_length = 2000
username = "******" password = "******" root = logging.getLogger() root.setLevel(logging.DEBUG) ch = logging.StreamHandler(sys.stdout) ch.setLevel(logging.DEBUG) formatter = logging.Formatter('%(asctime)s - %(name)s - %(levelname)s - %(message)s') ch.setFormatter(formatter) root.addHandler(ch) session = iHMPSession(username, password) print("Required fields: ") print(MicrobTranscriptomicsRawSeqSet.required_fields()) mtrss = MicrobTranscriptomicsRawSeqSet() mtrss.checksums = { "md5": "72bdc024d83226ccc90fbd2177e78d56" } mtrss.study = "prediabetes" print("Creating a temp file for example/testing purposes.") temp_file = tempfile.NamedTemporaryFile(delete=False).name print("Local file: %s" % temp_file) mtrss.local_file = temp_file mtrss.size = 13131 mtrss.seq_model = "test sequencer model" mtrss.exp_length = 2000