Python WgsDnaPrep.ncbi_taxon_id Beispiele

Beispiel #1

Datei: wgs_dna_prep.py Projekt: JAX-GM/cutlass

print("Required fields: ")
print(WgsDnaPrep.required_fields())

test_prep = WgsDnaPrep()

test_prep.comment = "test comment. Hello world!"
test_prep.frag_size = 2
test_prep.lib_layout = "test lib_layout"
test_prep.lib_selection = "test lib_selection"
test_prep.mims = mims
test_prep.storage_duration = 3
test_prep.sequencing_center = "test center"
test_prep.sequencing_contact = "test contact"
test_prep.prep_id = "test prep id"
test_prep.ncbi_taxon_id = "NCBI123ABC"
test_prep.links = { "prepared_from": [ "610a4911a5ca67de12cdc1e4b4011876" ] }

test_prep.tags = [ "test", "wgs_dna_prep", "ihmp" ]
test_prep.add_tag("another")
test_prep.add_tag("and_another")

print(test_prep.to_json(indent=2))

if test_prep.is_valid():
    print("Valid!")

    success = test_prep.save()

    if success:
        prep_id = test_prep.id

Beispiel #2

Datei: wgs_dna_prep.py Projekt: abhishek9691/cutlass

print("Required fields: ")
print(WgsDnaPrep.required_fields())

test_prep = WgsDnaPrep()

test_prep.comment = "test comment. Hello world!"
test_prep.frag_size = 2
test_prep.lib_layout = "test lib_layout"
test_prep.lib_selection = "test lib_selection"
test_prep.mims = mims
test_prep.storage_duration = 3
test_prep.sequencing_center = "test center"
test_prep.sequencing_contact = "test contact"
test_prep.prep_id = "test prep id"
test_prep.ncbi_taxon_id = "NCBI123ABC"
test_prep.links = {"prepared_from": "610a4911a5ca67de12cdc1e4b4011876"}

test_prep.tags = ["test", "wgs_dna_prep", "ihmp"]
test_prep.add_tag("another")
test_prep.add_tag("and_another")

print(test_prep.to_json(indent=2))

if test_prep.is_valid():
    print("Valid!")

    success = test_prep.save()

    if success:
        prep_id = test_prep.id