from setuptools import setup
from distutils.extension import Extension
from Cython.Build import cythonize
import cython_gsl
import numpy as np
extensions = [
Extension("wigner_3j.wigner_3j",
sources=["wigner_3j/wigner_3j.pyx"],
language="c", libraries = cython_gsl.get_libraries(),
library_dirs = [cython_gsl.get_library_dir()],
include_dirs = [cython_gsl.get_cython_include_dir(), np.get_include()])
]
setup(
name='Max Help',
version='0.01',
packages=['wigner_3j'],
url='',
license='',
author='Bryan Weinstein',
author_email='*****@*****.**',
description='',
include_dirs = [cython_gsl.get_include(), np.get_include()],
ext_modules = cythonize(extensions, annotate=True, reload_support=True)
)
from setuptools import setup
from distutils.extension import Extension
from Cython.Build import cythonize
import cython_gsl
import numpy as np
extensions = [
Extension(
"rough_front_expansion.cython",
sources=["rough_front_expansion/cython.pyx"],
language="c",
libraries=cython_gsl.get_libraries(),
library_dirs=[cython_gsl.get_library_dir()],
include_dirs=[cython_gsl.get_cython_include_dir(),
np.get_include()]),
Extension(
"rough_front_expansion.cython_D2Q9",
sources=["rough_front_expansion/cython_D2Q9.pyx"],
language="c",
libraries=cython_gsl.get_libraries(),
library_dirs=[cython_gsl.get_library_dir()],
include_dirs=[cython_gsl.get_cython_include_dir(),
np.get_include()])
]
setup(name='rough_front_expansion',
version='0.1',
packages=['rough_front_expansion'],
url='',
license='',
author='btweinstein',
# if len(sys.argv)>=3 and sys.argv[2][-2:]==".c":
# sources = f'"{sys.argv[1]}","{sys.argv[2]}"'
# else:
# sources = f'"{sys.argv[1]}"'
#from sysconfig import get_paths
#from pprint import pprint
#info = get_paths() # a diction
#input(info['include'])
numpy_I = np.get_include()
gls_I = cython_gsl.get_include()
lib_dir = os.getcwd()
lib_gls = cython_gsl.get_library_dir()
cython_include = cython_gsl.get_cython_include_dir()
setup = f"""
import os
import sys
from distutils.core import setup, Extension
from Cython.Build import cythonize
from Cython.Compiler import Options
import cython_gsl
##Whether or not to include docstring in the Python extension. If False, the binary size will be smaller
##but the __doc__ attribute of any class or function will be an empty string.
Options.docstrings = True
## generer un fichier html
Options.annotate = True
#Extension('power', ['power.pyx'],
# include_dirs=[np.get_include()]),
Extension('ndintegration', ['ndintegration.pyx'],
include_dirs=[np.get_include()],
libraries=['cuba'] ),
Extension('mymath', ['mymath.pyx'],
include_dirs=[np.get_include()]),
Extension('mpiutil', ['mpiutil.pyx'],
include_dirs=[np.get_include(),
mpi4py_include]),
Extension("sf", ["sf.pyx"],
include_dirs= [np.get_include(), cython_gsl.get_cython_include_dir(),
'../../clib', ],
libraries=cython_gsl.get_libraries()+['mysf'],
library_dirs=[cython_gsl.get_library_dir(), '../../clib/lib'] ),
Extension("alm", ["alm.pyx"],
include_dirs= [np.get_include(), '../../clib', ],
libraries=['mysf'],
library_dirs=[ '../../clib/lib'] ),
Extension("cgalio", ["cgalio.pyx", "../c/cgalio.c"],
libraries=cython_gsl.get_libraries()+["cuba"],
include_dirs=[np.get_include(), cython_gsl.get_cython_include_dir(), "../c/"],
library_dirs=[cython_gsl.get_library_dir(), './', "../c/"] )
]
from distutils.core import setup
from distutils.extension import Extension
from Cython.Build import cythonize
import cython_gsl
setup(name="chdp",
include_dirs=[cython_gsl.get_include()],
ext_modules=cythonize([
Extension("chdp",
["chdp.pyx", "evaluate.cpp", "sampler.cpp", "alias.cpp"],
libraries=cython_gsl.get_libraries(),
library_dirs=[cython_gsl.get_library_dir()],
include_dirs=[
cython_gsl.get_cython_include_dir(), "/usr/include/gsl"
],
extra_compile_args=["-fopenmp"],
extra_link_args=["-fopenmp"],
language="c++")
]))
from Cython.Distutils import build_ext
import cython_gsl
from setuptools import setup, find_packages, Extension
readme = open('README.rst').read()
setup(name='peircebayes',
version='0.0.1',
author='Calin-Rares Turliuc',
author_email='*****@*****.**',
license='MIT',
description='PeirceBayes - Probabilistic Logic Programming',
long_description=readme,
packages=find_packages(),
package_data={
'peircebayes': ['aprob.pl'],
},
install_requires = ['numpy>=1.9.2','scipy>=0.15.1','matplotlib>=1.4.3','cython>=0.22.1'],
entry_points={
'console_scripts': ['peircebayes = peircebayes.peircebayes:main']
},
include_dirs = [cython_gsl.get_include()],
cmdclass = {'build_ext': build_ext},
ext_modules = [Extension("peircebayes.prob_inference_dev",
["peircebayes/prob_inference_dev.pyx"],
libraries=cython_gsl.get_libraries(),
library_dirs=[cython_gsl.get_library_dir()],
include_dirs=[cython_gsl.get_cython_include_dir()])]
)
from distutils.core import setup
from distutils.extension import Extension
from Cython.Build import cythonize
import cython_gsl
setup(
name = "chdp",
include_dirs = [cython_gsl.get_include()],
ext_modules = cythonize(
[Extension("chdp",
["chdp.pyx", "evaluate.cpp", "sampler.cpp", "alias.cpp"],
libraries=cython_gsl.get_libraries(),
library_dirs=[cython_gsl.get_library_dir()],
include_dirs=[cython_gsl.get_cython_include_dir(), "/usr/include/gsl"],
extra_compile_args=["-fopenmp"],
extra_link_args=["-fopenmp"],
language="c++"
)
])
)
from distutils.extension import Extension
from Cython.Distutils import build_ext
import numpy as np
import cython_gsl
"""
"""
machine = os.environ['MACHINE']
if machine == 'mylaptop':
module = [
Extension("CGAL-IO", ["cgalio.pyx", "../c/cgalio.c"],
libraries=cython_gsl.get_libraries() + ["cuba"],
include_dirs=[
np.get_include(),
cython_gsl.get_cython_include_dir(), "../c/"
],
library_dirs=[cython_gsl.get_library_dir(), './', "../c/"]),
]
elif machine == 'gwln':
module = [
Extension(
"cgalio",
["cgalio.pyx", "../c/cgalio.c"],
libraries=cython_gsl.get_libraries() + ["cuba"],
include_dirs=[ #"/home/wangxin/workspace/lib/mylib/script/clib",
np.get_include(),
cython_gsl.get_cython_include_dir(), "../c/"
],
library_dirs=[cython_gsl.get_library_dir(), './', "../c/"]),
ext = '.pyx' if use_cython else '.c'
# from Cython.Compiler.Options import get_directive_defaults
# directive_defaults = get_directive_defaults()
# directive_defaults['linetrace'] = True
# directive_defaults['binding'] = True
omnibus_libraries = []
omnibus_library_dirs = []
omnibus_include_dirs = ['.']
if use_cython:
omnibus_libraries.extend(cython_gsl.get_libraries())
omnibus_library_dirs.append(cython_gsl.get_library_dir())
omnibus_include_dirs.append(cython_gsl.get_cython_include_dir())
cmdclass = {}
extensions = [
Extension(
"nd.change._omnibus",
["nd/change/_omnibus" + ext],
libraries=omnibus_libraries,
library_dirs=omnibus_library_dirs,
include_dirs=omnibus_include_dirs,
extra_compile_args=['-O3', '-fopenmp'],
extra_link_args=['-fopenmp'],
),
Extension(
"nd.filters._nlmeans",
from pip.req import parse_requirements
import Cython.Compiler.Options
import cython_gsl
import numpy
from Cython.Build import cythonize
# Generate compiler annotations in HTML
Cython.Compiler.Options.annotate = True
ext_modules = [
Extension(
"ciles.integrator",
["ciles/integrator.pyx"],
include_dirs=[
numpy.get_include(), cython_gsl.get_cython_include_dir()],
libraries=cython_gsl.get_libraries(),
library_dirs=[cython_gsl.get_library_dir()],
)
]
# Parse requirements
install_reqs = parse_requirements('requirements.txt', session=False)
reqs = [str(ir.req) for ir in install_reqs]
# Parse readme
def readme():
with open('README.rst') as f:
return f.read()
from distutils.core import setup
from Cython.Build import cythonize
from distutils.extension import Extension
import numpy
import cython_gsl
include_gsl_dir = "/usr/include/"
lib_gsl_dir = "/usr/lib/"
extensions = [
Extension("util", ["util.pyx"],
include_dirs = [numpy.get_include(),
include_gsl_dir,
cython_gsl.get_cython_include_dir()],
libraries = cython_gsl.get_libraries(),
library_dirs = [lib_gsl_dir,
cython_gsl.get_library_dir()]),
]
setup(
ext_modules = cythonize(extensions),
)
## python setup_util.py build_ext --inplace
# ),
Extension("solvers.grid_functions",
["solvers/grid_functions.pyx"],
include_dirs=[np.get_include()], library_dirs=[], libraries=["m"],
extra_compile_args=["-fopenmp"],
extra_link_args=["-fopenmp"],
),
Extension("cobra_functions.stats",
["cobra_functions/stats.pyx"],
include_dirs=[np.get_include()], library_dirs=[], libraries=["m"],
#extra_compile_args=["-g"],
#extra_link_args=["-g"],
),
Extension("cobra_functions.random",
["cobra_functions/random.pyx"],
include_dirs=[np.get_include(), cython_gsl.get_cython_include_dir()],
#extra_compile_args=["-g"],
#extra_link_args=["-g"],
library_dirs=[], libraries=["gsl", "gslcblas"],
),
Extension("solvers.compute_potential_fgreenm2m",
["solvers/compute_potential_fgreenm2m.pyx"],
include_dirs=[np.get_include()], library_dirs=[], libraries=["m"],
#extra_compile_args=["-g"],
#extra_link_args=["-g"],
),
Extension("cobra_functions.interp1d",
["cobra_functions/interp1d.pyx"],
include_dirs=[np.get_include()], library_dirs=[], libraries=["m"],
#extra_compile_args=["-g"],
#extra_link_args=["-g"],
def get_ext_filename(self, ext_name):
filename = super().get_ext_filename(ext_name)
return get_ext_filename_without_platform_suffix(filename)
cmdclass_option = {'build_ext': BuildExtWithoutPlatformSuffix}
else:
raise ValueError(
'You are not using neither Python2 nor Python3, probably you are a time traveller from the Future or from the Past'
)
#cython gsl
cy_gsl_lib = cython_gsl.get_libraries()
cy_gsl_inc = cython_gsl.get_include()
cy_gsl_lib_dic = cython_gsl.get_library_dir()
#cython
cy_gsl_inc_cy = cython_gsl.get_cython_include_dir()
#numpy
np_inc = numpy.get_include()
gh = ['galpynamics/src/pot_halo/pot_c_ext/general_halo.pyx']
gh_ext = Extension('galpynamics.src.pot_halo.pot_c_ext.general_halo',
sources=gh)
ih = ['galpynamics/src/pot_halo/pot_c_ext/isothermal_halo.pyx']
ih_ext = Extension('galpynamics.src.pot_halo.pot_c_ext.isothermal_halo',
sources=ih)
infw = ['galpynamics/src/pot_halo/pot_c_ext/nfw_halo.pyx']
infw_ext = Extension('galpynamics.src.pot_halo.pot_c_ext.nfw_halo',
sources=infw)
