Beispiel #1
0
def text_dandiset(
        dandi_client: DandiAPIClient,
        tmp_path_factory: pytest.TempPathFactory) -> Iterator[Dict[str, Any]]:
    d = dandi_client.create_dandiset(
        "Dandiset for testing backups2datalad",
        {
            "schemaKey":
            "Dandiset",
            "name":
            "Dandiset for testing backups2datalad",
            "description":
            "A test text Dandiset",
            "contributor":
            [{
                "schemaKey": "Person",
                "name": "Wodder, John",
                "roleName": ["dcite:Author", "dcite:ContactPerson"],
            }],
            "license": ["spdx:CC0-1.0"],
            "manifestLocation": ["https://github.com/dandi/dandi-cli"],
        },
    )
    dandiset_id = d.identifier
    dspath = tmp_path_factory.mktemp("text_dandiset")
    (dspath /
     dandiset_metadata_file).write_text(f"identifier: '{dandiset_id}'\n")
    (dspath / "file.txt").write_text("This is test text.\n")
    (dspath / "v0.txt").write_text("Version 0\n")
    (dspath / "subdir1").mkdir()
    (dspath / "subdir1" / "apple.txt").write_text("Apple\n")
    (dspath / "subdir2").mkdir()
    (dspath / "subdir2" / "banana.txt").write_text("Banana\n")
    (dspath / "subdir2" / "coconut.txt").write_text("Coconut\n")

    def upload_dandiset(paths: Optional[List[str]] = None,
                        **kwargs: Any) -> None:
        upload(
            paths=paths or [dspath],
            dandi_instance="dandi-staging",
            devel_debug=True,
            allow_any_path=True,
            validation="skip",
            **kwargs,
        )

    try:
        upload_dandiset()
        yield {
            "client": dandi_client,
            "dspath": dspath,
            "dandiset": d,
            "dandiset_id": dandiset_id,
            "reupload": upload_dandiset,
        }
    finally:
        for v in d.get_versions():
            if v.identifier != "draft":
                dandi_client.delete(f"{d.api_path}versions/{v.identifier}/")
        d.delete()
Beispiel #2
0
def main(api_url, token, dandiset_path, delete_extant, only_metadata):
    client = DandiAPIClient(api_url=api_url, token=token)
    with client.session():
        for dpath in dandiset_path:
            dandiset = APIDandiset(dpath)
            if delete_extant:
                try:
                    client.get_dandiset(dandiset.identifier, "draft")
                except requests.HTTPError as e:
                    if e.response.status_code != 404:
                        raise
                else:
                    print("Dandiset", dandiset.identifier, "already exists; deleting")
                    client.delete(f"/dandisets/{dandiset.identifier}/")
            if only_metadata:
                print("Setting metadata for Dandiset", dandiset.identifier)
                client.set_dandiset_metadata(
                    dandiset.identifier, metadata=dandiset.metadata
                )
            else:
                print("Creating Dandiset", dandiset.identifier)
                client.create_dandiset(
                    name=dandiset.metadata.get("name", ""), metadata=dandiset.metadata
                )