class DatabaseTests:
def __init__(self):
db = "test.db"
os.remove(db)
self.__db = Database(db)
self.__db.load()
failures = 0
try:
self.__db.add_user("jrenggli", "*****@*****.**", 42)
self.__db.add_user("yschaerli", "*****@*****.**", 8383)
self.__db.add_user("jreNggli", "*****@*****.**", 28482)
except sqlite3.IntegrityError:
assert(False)
except Exception:
failures += 1
finally:
assert(failures == 1)
src = None
try:
src = self.__db.add_source("RCSB", "text/pdb", "http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId={0}", "RCSB Protein Data Bank")
except sqlite3.IntegrityError, e:
assert(False)
except Exception, e:
failures += 1
assert(False)
class DatabaseTests:
def __init__(self):
db = "test.db"
os.remove(db)
self.__db = Database(db)
self.__db.load()
failures = 0
try:
self.__db.add_user("jrenggli", "*****@*****.**", 42)
self.__db.add_user("yschaerli", "*****@*****.**", 8383)
self.__db.add_user("jreNggli", "*****@*****.**", 28482)
except sqlite3.IntegrityError:
assert (False)
except Exception:
failures += 1
finally:
assert (failures == 1)
src = None
try:
src = self.__db.add_source(
"RCSB", "text/pdb",
"http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId={0}",
"RCSB Protein Data Bank")
except sqlite3.IntegrityError, e:
assert (False)
except Exception, e:
failures += 1
assert (False)
#! /usr/bin/python3
from database.database import Database
if __name__ == "__main__":
db = Database()
db.load()
db.add_source(
"RCSB", "pdb",
"http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId={0}",
"RCSB Protein Data Bank")
# db.add_source("raspbian", "pdb", "http://192.168.2.128:8080/static/{0}.pdb", "Local test host")
#db.add_user("jrenggli", "*****@*****.**", 42)
source = db.find_source("rcsb", "pdb")
#source = db.find_source("raspbian", "pdb")
if not source:
raise Exception("Source not found!")
proteins = ["2KXR"] #, "3M3N"]
for name in proteins:
protein = db.get_protein_info(source, name)
if not protein:
raise Exception("Protein not found!")
for mid in protein.get_models():
model = db.load_model(protein, mid)
print(len(model.getvalue()))
print("main")
#! /usr/bin/python3
from database.database import Database
if __name__ == "__main__":
db = Database()
db.load()
db.add_source("RCSB", "pdb",
"http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId={0}",
"RCSB Protein Data Bank")
# db.add_source("raspbian", "pdb", "http://192.168.2.128:8080/static/{0}.pdb", "Local test host")
#db.add_user("jrenggli", "*****@*****.**", 42)
source = db.find_source("rcsb", "pdb")
#source = db.find_source("raspbian", "pdb")
if not source:
raise Exception("Source not found!")
proteins = ["2KXR"]#, "3M3N"]
for name in proteins:
protein = db.get_protein_info(source, name)
if not protein:
raise Exception("Protein not found!")
for mid in protein.get_models():
model = db.load_model(protein, mid)
print(len(model.getvalue()))
print("main")
