def _setup_assessors(proj_id, subj_id, session):
for i in range(1, 3):
SessionTools.add_assessor(
session,
'{}-x-{}-x-{}-x-{}-x-Proc_X_v1'.format(proj_id, subj_id,
session.label(), i),
assessor_presets['Proc_X_v1'], 'no_inputs')
def test_build_matrix(self):
input_headers = ['xsitype', 'quality', 'type', 'files']
input_xsitype = ['xnat:mrScanData']
input_quality = ['unusable', 'usable', 'preferred']
input_type = ['T1', 'T2']
input_files = [
[],
[('NIFTI', ['images.nii'])],
# [('NIFTI', ['images.nii']), ('SNAPSHOTS', ['snapshot.jpg.gz',
# 'snapshot(1).jpg.gz'])]
]
input_values = [input_xsitype, input_quality, input_type, input_files]
input_table_values = itertools.product(*input_values)
input_table = [[dict(zip(input_headers, r))]
for r in input_table_values]
headers = ['required', 'select', 'quality', 'inputs']
required = [None, False, True]
select = [None, 'foreach']
quality = [None, False, True]
input_fields = [[]] + [i for i in input_table]
values = [required, select, quality, input_fields]
table_values = itertools.product(*values)
table = [dict(zip(headers, r)) for r in table_values]
# generate the scan artefacts against which this is run
for scans in input_table:
for scan in scans:
SessionTools.add_scan(None, 'scan1', scan)
print((len(table)))
def test_build_matrix(self):
input_headers = ['xsitype', 'quality', 'type', 'files']
input_xsitype = ['xnat:mrScanData']
input_quality = ['unusable', 'usable', 'preferred']
input_type = ['T1', 'T2']
input_files = [
[],
[('NIFTI', ['images.nii'])],
#[('NIFTI', ['images.nii']), ('SNAPSHOTS', ['snapshot.jpg.gz', 'snapshot(1).jpg.gz'])]
]
input_values = [input_xsitype, input_quality, input_type, input_files]
input_table_values = itertools.product(*input_values)
input_table = map(lambda r: [dict(itertools.izip(input_headers, r))],
input_table_values)
headers = ['required', 'select', 'quality', 'inputs']
required = [None, False, True]
select = [None, 'foreach']
quality = [None, False, True]
input_fields = [[]] + [i for i in input_table]
values = [required, select, quality, input_fields]
table_values = itertools.product(*values)
table = map(lambda r: dict(itertools.izip(headers, r)), table_values)
# generate the scan artefacts against which this is run
for scans in input_table:
for scan in scans:
SessionTools.add_scan(None, 'scan1', scan)
print len(table)
def _setup_assessors(proj_id, subj_id, session):
for i in range(1, 3):
SessionTools.add_assessor(
session,
'{}-x-{}-x-{}-x-{}-x-Proc_X_v1'.format(proj_id, subj_id, session.label(), i),
assessor_presets['Proc_X_v1'],
'no_inputs')
def test_create_assessor_with_no_input(self):
with XnatUtils.get_interface(host=host) as intf:
intf.connect()
e = intf.select_experiment(proj_id, subj_id, sess_id)
if not e.exists():
self.assertTrue(
False, "Unexpected: {}//{}//{} does not exist".format(
proj_id, subj_id, sess_id))
proc_a_params = {
'xsitype': asrxsitype,
'proctype': 'Proc_A_v1',
'files': [('SEG', ['seg.gz'])]
}
SessionTools.add_assessor(e, 'proc1-x-subj1-x-sess1-x-2-Proc_A_v1',
proc_a_params, 'no_inputs')
def test_create_assessor_with_no_input(self):
with XnatUtils.get_interface(host=host) as intf:
intf.connect()
e = intf.select_experiment(proj_id, subj_id, sess_id)
if not e.exists():
self.assertTrue(
False,
"Unexpected: {}//{}//{} does not exist".format(
proj_id, subj_id, sess_id
))
proc_a_params = {
'xsitype': asrxsitype,
'proctype': 'Proc_A_v1',
'files': [
('SEG', ['seg.gz'])
]
}
SessionTools.add_assessor(e,
'proc1-x-subj1-x-sess1-x-2-Proc_A_v1',
proc_a_params,
'no_inputs')
def _setup_scans(session, scan_descriptors):
for s, d in scan_descriptors:
print((s, d))
SessionTools.add_scan(session, s, scan_presets[d])
def _setup_scans(session, scan_descriptors):
for s, d in scan_descriptors:
print(s, d)
SessionTools.add_scan(session, s, scan_presets[d])