def get(self):
if 'reqType' in self.request.GET:
if self.request.get('reqType') == 'delete':
errorLogsId = int(self.request.get('id'))
errorLogsDb = SBMLImportErrorLogs.get_by_id(errorLogsId)
errorLogsDb.delete()
self.redirect("/importFromSBML")
errorLogsDbQuery = list(
db.GqlQuery("SELECT * FROM SBMLImportErrorLogs WHERE user_id = :1",
self.user.user_id()).run())
errorLogsDbQuery = sorted(
errorLogsDbQuery,
key=lambda x:
(datetime.datetime.strptime(x.date, '%Y-%m-%d-%H-%M-%S')
if hasattr(x, 'date') and x.date != None else datetime.datetime.
now()),
reverse=True)
result = []
for error in errorLogsDbQuery:
modelDb = StochKitModelWrapper.get_by_id(error.modelId)
result.append({
'id': error.key().id(),
'date': error.date,
'fileName': error.fileName,
'modelName': modelDb.name if modelDb else None
})
self.render_response('importFromSBML.html', **{"errors": result})
def get(self):
if 'id' in self.request.GET:
errorLogsId = int(self.request.get('id'));
errorLogsDb = SBMLImportErrorLogs.get_by_id(errorLogsId)
modelDb = StochKitModelWrapper.get_by_id(errorLogsDb.modelId)
result = { "db" : errorLogsDb,
"modelName" : modelDb.name if modelDb else None }
print result["db"].errors
self.render_response('SBMLErrorLogs.html', **result)
def get(self):
if 'id' in self.request.GET:
errorLogsId = int(self.request.get('id'));
errorLogsDb = SBMLImportErrorLogs.get_by_id(errorLogsId)
modelDb = StochKitModelWrapper.get_by_id(errorLogsDb.modelId)
result = { "db" : errorLogsDb,
"modelName" : modelDb.name if modelDb else None }
print result["db"].errors
self.render_response('SBMLErrorLogs.html', **result)
def post(self):
try:
storage = self.request.POST['datafile']
name = storage.filename.split('.')[0]
tmp = tempfile.NamedTemporaryFile(delete=False)
filename = tmp.name
tmp.write(storage.file.read())
tmp.close()
#stochKitModel = stochss.stochkit.StochMLDocument.fromString(storage.file.read()).toModel(name)
model, errors = stochss.SBMLconverter.convertToStochSS(filename)
modelDb = createStochKitModelWrapperFromStochKitModel(self, model)
modelDb.units = model.units
modelDb.put()
errorLogsDb = SBMLImportErrorLogs()
errorLogsDb.modelId = modelDb.key().id()
errorLogsDb.user_id = self.user.user_id()
errorLogsDb.fileName = storage.filename
errorLogsDb.errors = errors
errorLogsDb.date = time.strftime("%Y-%m-%d-%H-%M-%S")
errorLogsDb.put()
os.remove(filename)
#self.redirect("/modeleditor?select={0}".format(modelDb.key().id()))
self.redirect("/SBMLErrorLogs?id={0}".format(
errorLogsDb.key().id()))
except Exception as e:
traceback.print_exc()
result = {}
result['status'] = False
result['msg'] = 'Error: {0}'.format(e)
self.render_response("importFromSBML.html", **result)
def post(self):
try:
storage = self.request.POST['datafile']
name = storage.filename.split('.')[0]
tmp = tempfile.NamedTemporaryFile(delete = False)
filename = tmp.name
tmp.write(storage.file.read())
tmp.close()
#stochKitModel = stochss.stochkit.StochMLDocument.fromString(storage.file.read()).toModel(name)
model, errors = stochss.SBMLconverter.convertToStochSS(filename)
modelDb = createStochKitModelWrapperFromStochKitModel(self, model)
modelDb.units = model.units
modelDb.put()
errorLogsDb = SBMLImportErrorLogs()
errorLogsDb.modelId = modelDb.key().id()
errorLogsDb.user_id = self.user.user_id()
errorLogsDb.fileName = storage.filename
errorLogsDb.errors = errors
errorLogsDb.date = time.strftime("%Y-%m-%d-%H-%M-%S")
errorLogsDb.put()
os.remove(filename)
#self.redirect("/modeleditor?select={0}".format(modelDb.key().id()))
self.redirect("/SBMLErrorLogs?id={0}".format(errorLogsDb.key().id()))
except Exception as e:
traceback.print_exc()
result = {}
result['status'] = False
result['msg'] = 'Error: {0}'.format(e)
self.render_response("importFromSBML.html", **result)
def get(self):
if 'reqType' in self.request.GET:
if self.request.get('reqType') == 'delete':
errorLogsId = int(self.request.get('id'));
errorLogsDb = SBMLImportErrorLogs.get_by_id(errorLogsId)
errorLogsDb.delete()
self.redirect("/importFromSBML")
errorLogsDbQuery = list(db.GqlQuery("SELECT * FROM SBMLImportErrorLogs WHERE user_id = :1", self.user.user_id()).run())
errorLogsDbQuery = sorted(errorLogsDbQuery, key = lambda x : (datetime.datetime.strptime(x.date, '%Y-%m-%d-%H-%M-%S') if hasattr(x, 'date') and x.date != None else datetime.datetime.now()), reverse = True)
result = []
for error in errorLogsDbQuery:
modelDb = StochKitModelWrapper.get_by_id(error.modelId)
result.append( { 'id' : error.key().id(),
'date' : error.date,
'fileName' : error.fileName,
'modelName' : modelDb.name if modelDb else None } )
self.render_response('importFromSBML.html', **{ "errors" : result })