def test_change_extra_metadata(self):
epidb = DeepBlueClient(address="localhost", port=31415)
self.init_base(epidb)
user_id, user_key = self.get_new_user(epidb)
self.modify_user_permission(epidb, user_id, "INCLUDE_COLLECTION_TERMS")
s, id = epidb.add_biosource("lsdjf", "sdf", {
"a": "b",
"c": "d"
}, user_key)
s = epidb.change_extra_metadata(id, "a", "f", user_key)
self.assertSuccess(s)
s = epidb.change_extra_metadata(id, "c", "g", self.admin_key)
self.assertSuccess(s)
s, user = epidb.add_user("user2", "email2", "institution2",
self.admin_key)
self.assertSuccess(s)
user_id2, user_key2 = user
self.modify_user_permission(epidb, user_id2,
"INCLUDE_COLLECTION_TERMS")
s = epidb.change_extra_metadata(id, "c", "g", user_key2)
self.assertFailure(s)
def test_change_extra_metadata(self):
epidb = DeepBlueClient(address="localhost", port=31415)
self.init_base(epidb)
sample_id = self.sample_ids[0]
regions_data = "chr1\t1\t100"
format = ""
# adding two experiments with the same data should work
res = epidb.add_experiment("test_exp1", "hg19", "Methylation",
sample_id, "tech1", "ENCODE", "desc1",
regions_data, format, {
"NAME": "FELIPE",
"LAST_NAME": "ALBRECHT"
}, self.admin_key)
self.assertSuccess(res)
_id = res[1]
res = epidb.change_extra_metadata(_id, "NAME", "JOSE", self.admin_key)
self.assertSuccess(res)
res = epidb.change_extra_metadata(_id, "LAST_NAME", "FERNANDES",
self.admin_key)
self.assertSuccess(res)
status, info = epidb.info(_id, self.admin_key)
self.assertSuccess(status, info)
self.assertEqual({
"NAME": "JOSE",
"LAST_NAME": "FERNANDES"
}, info[0]["extra_metadata"])
(status, ss) = epidb.search("JOSE", "", self.admin_key)
self.assertEqual(1, len(ss))
(status, ss) = epidb.search("FELIPE", "", self.admin_key)
self.assertEqual(0, len(ss))
res = epidb.change_extra_metadata(sample_id, "source", "ENCODE",
self.admin_key)
self.assertSuccess(res)
s, info = epidb.info(sample_id, self.admin_key)
self.assertEqual(info[0]["source"], "ENCODE")
