def test_zip_reader():
p = find_resource("resources")
D = DcmDir(path=p)
f = D.get("dcm/IM2263", view=DixelView.TAGS_FILE)
gs = D.get_zipped("dcm_zip/test.zip")
for _g in gs:
if "2263" in _g.meta["FileName"]:
g = _g
break
logging.debug(f)
logging.debug(g)
assert(f.tags["StudyInstanceUID"] == g.tags["StudyInstanceUID"])
from binascii import hexlify
logging.debug("f file:")
logging.debug( hexlify(f.file[1024:2048]) )
logging.debug("g file:")
logging.debug( hexlify(g.file[1024:2048]) )
assert f.file == g.file
import os, yaml
from diana.apis import DcmDir, Orthanc
D = DcmDir(path="/data")
svcs_t = os.environ.get("DIANA_SERVICES")
svcs = yaml.load(svcs_t)
print(svcs)
args = svcs.get("renalstone")
O = Orthanc(**args)
for d in D.files(rex="*.zip"):
file_set = D.get_zipped(d)
for f in file_set:
O.put(f)
import os, logging
from pprint import pformat
from diana.apis import DcmDir
logging.basicConfig(level=logging.DEBUG)
location = "/Users/derek/Desktop"
ep = DcmDir(path=location)
files = ["test.dum-1.zip"]
# for fi in ep.files(rex="*.zip"):
for fi in files:
contents = ep.get_zipped(fi)
# for item in contents:
# logging.debug("{}: {}: {}".format(item.fn, item.tags.get("Modality"), item.tags.get("SeriesNumber")))
# contents = list(filter(lambda x: int(x.tags.get("SeriesNumber")) < 9999, contents))
contents = list(filter(lambda x: x.tags.get("Modality") == "CT", contents))
# logging.debug(pformat(contents))
# for item in contents:
# logging.debug("{}: {}: {}".format(item.fn, item.tags.get("Modality"), item.tags.get("SeriesNumber")))
# ep.delete(f)
fo = "filtered-{}.zip".format('.'.join(os.path.splitext(fi)[:-1]))
ep.put_zipped(fo, contents)