def __init__( self, sourceAlnHit=None ):
"""Can be constructed from another alignment hit
(copies __dict__ over), or denovo."""
if sourceAlnHit:
self.__dict__ = sourceAlnHit.__dict__.copy()
else:
AlignmentHit.__init__( self )
self._colToValue = None
self.hasPulseInfo = False
def __init__( self ):
"""Set up some public attributes where we'll store the
pulse metrics for now."""
AlignmentHit.__init__( self )
self.pulses = {}
def __init__(self):
AlignmentHit.__init__(self)
self.alignedQuery = ''
self.alignedTarget = ''
self.zScore=-100.0
