def test_should_read_journals_and_issues(
self, open_mock, create_output_dir_mock, read_json_file_mock
):
read_json_file_mock.side_effect = [SAMPLE_JOURNALS_JSON, SAMPLE_ISSUES_JSON]
pipeline.link_documents_bundles_with_journals(
"~/title.json", "~/issues.json", "~/json/output.json"
)
self.assertEqual(2, read_json_file_mock.call_count)
def migrate_isis_parser(sargs):
parser = argparse.ArgumentParser(description="ISIS database migration tool")
subparsers = parser.add_subparsers(title="Commands", metavar="", dest="command")
extract_parser = subparsers.add_parser("extract", help="Extract mst files to json")
extract_parser.add_argument(
"mst_file_path", metavar="file", help="Path to MST file that will be extracted"
)
extract_parser.add_argument("--output", required=True, help="The output file path")
import_parser = subparsers.add_parser(
"import",
parents=[mongodb_parser(sargs)],
help="Process JSON files then import into Kernel database",
)
import_parser.add_argument(
"import_file",
metavar="file",
help="JSON file path that contains mst extraction result, e.g: collection-title.json",
)
import_parser.add_argument(
"--type",
help="Type of JSON file that will load into Kernel database",
choices=["journal", "issue", "documents-bundles-link"],
required=True,
)
link_parser = subparsers.add_parser(
"link",
help="Generate JSON file of journals' ids and their issues linked by ISSN",
)
link_parser.add_argument(
"issues",
help="JSON file path that contains mst extraction result, e.g: ~/json/collection-issues.json",
)
link_parser.add_argument("--output", required=True, help="The output file path")
args = parser.parse_args(sargs)
if args.command == "extract":
extract_isis.create_output_dir(args.output)
extract_isis.run(args.mst_file_path, args.output)
elif args.command == "import":
mongo = ds_adapters.MongoDB(uri=args.uri, dbname=args.db)
Session = ds_adapters.Session.partial(mongo)
if args.type == "journal":
pipeline.import_journals(args.import_file, session=Session())
elif args.type == "issue":
pipeline.import_issues(args.import_file, session=Session())
elif args.type == "documents-bundles-link":
pipeline.import_documents_bundles_link_with_journal(
args.import_file, session=Session()
)
elif args.command == "link":
pipeline.link_documents_bundles_with_journals(args.issues, args.output)
else:
parser.print_help()
def test_should_create_output_folder(
self, open_mock, create_output_dir_mock, read_json_file_mock
):
read_json_file_mock.return_value = []
pipeline.link_documents_bundles_with_journals(
"~/title.json", "~/issues.json", "~/json/output.json"
)
create_output_dir_mock.return_value = None
create_output_dir_mock.assert_called_once()
def test_should_write_output_file(
self, open_mock, create_output_dir_mock, read_json_file_mock
):
read_json_file_mock.side_effect = [SAMPLE_JOURNALS_JSON, SAMPLE_ISSUES_JSON]
open_mock.side_effect = mock.mock_open()
pipeline.link_documents_bundles_with_journals(
"~/title.json", "~/issues.json", "~/json/output.json"
)
open_mock.assert_called_once_with("~/json/output.json", "w")
open_mock = open_mock()
open_mock.write.assert_called_once()
self.assertIn("0001-3714", str(open_mock.write.call_args))
