def _initialize(suppress_warning=False):
'''
:param suppress_warning: Whether to suppress the warning message for any mismatch found in the environment variables and the dx configuration file
:type suppress_warning: boolean
'''
global _DEBUG, _UPGRADE_NOTIFY
_DEBUG = True if '_DX_DEBUG' in os.environ else False
_UPGRADE_NOTIFY = os.path.expanduser('~/.dnanexus_config/.upgrade_notify')
if os.path.exists(_UPGRADE_NOTIFY) and os.path.getmtime(_UPGRADE_NOTIFY) > time.time() - 86400: # 24 hours
_UPGRADE_NOTIFY = False
env_vars = get_env(suppress_warning)
for var in env_vars:
if env_vars[var] is not None:
os.environ[var] = env_vars[var]
set_api_server_info(host=os.environ.get("DX_APISERVER_HOST", None),
port=os.environ.get("DX_APISERVER_PORT", None),
protocol=os.environ.get("DX_APISERVER_PROTOCOL", None))
if "DX_SECURITY_CONTEXT" in os.environ:
set_security_context(json.loads(os.environ['DX_SECURITY_CONTEXT']))
if "DX_JOB_ID" in os.environ:
set_job_id(os.environ["DX_JOB_ID"])
if "DX_WORKSPACE_ID" in os.environ:
set_workspace_id(os.environ["DX_WORKSPACE_ID"])
if "DX_PROJECT_CONTEXT_ID" in os.environ:
set_project_context(os.environ["DX_PROJECT_CONTEXT_ID"])
else:
if "DX_PROJECT_CONTEXT_ID" in os.environ:
set_workspace_id(os.environ["DX_PROJECT_CONTEXT_ID"])
set_project_context(os.environ["DX_PROJECT_CONTEXT_ID"])
def _initialize(suppress_warning=False):
'''
:param suppress_warning: Whether to suppress the warning message for any mismatch found in the environment variables and the dx configuration file
:type suppress_warning: boolean
'''
global _DEBUG
_DEBUG = False
if '_DX_DEBUG' in os.environ:
_DEBUG = True
env_vars = get_env(suppress_warning)
for var in env_vars:
if env_vars[var] is not None:
os.environ[var] = env_vars[var]
set_api_server_info(host=os.environ.get("DX_APISERVER_HOST", None),
port=os.environ.get("DX_APISERVER_PORT", None),
protocol=os.environ.get("DX_APISERVER_PROTOCOL", None))
if "DX_SECURITY_CONTEXT" in os.environ:
set_security_context(json.loads(os.environ['DX_SECURITY_CONTEXT']))
if "DX_JOB_ID" in os.environ:
set_job_id(os.environ["DX_JOB_ID"])
if "DX_WORKSPACE_ID" in os.environ:
set_workspace_id(os.environ["DX_WORKSPACE_ID"])
if "DX_PROJECT_CONTEXT_ID" in os.environ:
set_project_context(os.environ["DX_PROJECT_CONTEXT_ID"])
else:
if "DX_PROJECT_CONTEXT_ID" in os.environ:
set_workspace_id(os.environ["DX_PROJECT_CONTEXT_ID"])