def _start(self):
"""Open the image file, read the image header, copy it into a
dictionary for future reference."""
FormatCBF._start(self)
cif_header = FormatCBF.get_cbf_header(self._image_file)
self._cif_header_dictionary = {}
for record in cif_header.split("\n"):
if record[:1] != "#":
continue
if len(record[1:].split()) <= 2 and record.count(":") == 2:
self._cif_header_dictionary["timestamp"] = record[1:].strip()
continue
tokens = record.replace("=", "").replace(":", "").split()
self._cif_header_dictionary[tokens[1]] = " ".join(tokens[2:])
for record in self._mime_header.split("\n"):
if not record.strip():
continue
token, value = record.split(":")
self._cif_header_dictionary[token.strip()] = value.strip()
def _start(self):
'''Open the image file, read the image header, copy it into a
dictionary for future reference.'''
FormatCBF._start(self)
cif_header = FormatCBF.get_cbf_header(self._image_file)
self._cif_header_dictionary = {}
for record in cif_header.split('\n'):
if not '#' in record[:1]:
continue
if len(record[1:].split()) <= 2 and record.count(':') == 2:
self._cif_header_dictionary['timestamp'] = record[1:].strip()
continue
tokens = record.replace('=', '').replace(':', '').split()[1:]
self._cif_header_dictionary[tokens[0]] = ' '.join(tokens[1:])
for record in self._mime_header.split('\n'):
if not record.strip():
continue
token, value = record.split(':')
self._cif_header_dictionary[token.strip()] = value.strip()
return
def _start(self):
'''Open the image file, read the image header, copy it into a
dictionary for future reference.'''
FormatCBF._start(self)
cif_header = FormatCBF.get_cbf_header(self._image_file)
self._cif_header_dictionary = { }
for record in cif_header.split('\n'):
if not '#' in record[:1]:
continue
if len(record[1:].split()) <= 2 and record.count(':') == 2:
self._cif_header_dictionary['timestamp'] = record[1:].strip()
continue
tokens = record.replace('=', '').replace(':', '').split()[1:]
self._cif_header_dictionary[tokens[0]] = ' '.join(tokens[1:])
for record in self._mime_header.split('\n'):
if not record.strip():
continue
token, value = record.split(':')
self._cif_header_dictionary[token.strip()] = value.strip()
return
def _start(self):
'''Open the image file as a cbf file handle, and keep this somewhere
safe.'''
FormatCBF._start(self)
from iotbx.detectors.cbf import CBFImage
self.detectorbase = CBFImage(self._image_file)
self.detectorbase.readHeader()
def _start(self):
"""Read the image header and copy it into a dictionary for future reference.
In this case the header is useless, so we populate the dictionary manually
with dummy values"""
FormatCBF._start(self)
self._cif_header_dictionary = {}
self._cif_header_dictionary["Detector_distance"] = "3.523 m"
self._cif_header_dictionary["Beam_xy"] = "(1024.0, 1024.0) pixels"
self._cif_header_dictionary["Wavelength"] = "0.02508 A"
self._cif_header_dictionary["Pixel_size"] = "30e-6 m x 30e-6 m"
self._cif_header_dictionary["X-Binary-Size-Fastest-Dimension"] = "2048"
self._cif_header_dictionary["X-Binary-Size-Second-Dimension"] = "2048"
self._cif_header_dictionary["Count_cutoff"] = "65535 counts"
self._cif_header_dictionary["Phi"] = "0.0000 deg."
def _start(self):
"""Open the image file as a cbf file handle, and keep this somewhere
safe."""
from dxtbx.format.FormatCBF import FormatCBF
FormatCBF._start(self) # Note, skip up an inhieritance level
def _start(self):
'''Open the image file as a cbf file handle, and keep this somewhere
safe.'''
FormatCBF._start(self)
def _start(self):
"""Open the image file as a cbf file handle, and keep this somewhere
safe."""
FormatCBF._start(self)
def _start(self):
"""Open the image file as a cbf file handle, and keep this somewhere
safe."""
FormatCBF._start(self) # Note, skip up an inheritance level
def _start(self): '''Open the image file as a cbf file handle, and keep this somewhere safe.''' from dxtbx.format.FormatCBF import FormatCBF FormatCBF._start(self) # Note, skip up an inhieritance level
