def configure_step(self):
"""Configure build:
- set required environment variables (for netCDF, JasPer)
- patch compile script and ungrib Makefile for non-default install paths of WRF and JasPer
- run configure script and figure how to select desired build option
- patch configure.wps file afterwards to fix 'serial compiler' setting
"""
# netCDF dependency check + setting env vars (NETCDF, NETCDFF)
set_netcdf_env_vars(self.log)
# WRF dependency check
wrf = get_software_root('WRF')
if wrf:
wrfdir = os.path.join(wrf,
det_wrf_subdir(get_software_version('WRF')))
else:
raise EasyBuildError("WRF module not loaded?")
self.compile_script = 'compile'
if LooseVersion(self.version) >= LooseVersion('4.0.3'):
# specify install location of WRF via $WRF_DIR (supported since WPS 4.0.3)
# see https://github.com/wrf-model/WPS/pull/102
env.setvar('WRF_DIR', wrfdir)
else:
# patch compile script so that WRF is found
regex_subs = [(r"^(\s*set\s*WRF_DIR_PRE\s*=\s*)\${DEV_TOP}(.*)$",
r"\1%s\2" % wrfdir)]
apply_regex_substitutions(self.compile_script, regex_subs)
# libpng dependency check
libpng = get_software_root('libpng')
zlib = get_software_root('zlib')
if libpng:
paths = [libpng]
if zlib:
paths.insert(0, zlib)
libpnginc = ' '.join(
['-I%s' % os.path.join(path, 'include') for path in paths])
libpnglib = ' '.join(
['-L%s' % os.path.join(path, 'lib') for path in paths])
else:
# define these as empty, assume that libpng will be available via OS (e.g. due to --filter-deps=libpng)
libpnglib = ""
libpnginc = ""
# JasPer dependency check + setting env vars
jasper = get_software_root('JasPer')
if jasper:
env.setvar('JASPERINC', os.path.join(jasper, "include"))
jasperlibdir = os.path.join(jasper, "lib")
env.setvar('JASPERLIB', jasperlibdir)
jasperlib = "-L%s" % jasperlibdir
else:
raise EasyBuildError("JasPer module not loaded?")
# patch ungrib Makefile so that JasPer is found
jasperlibs = "%s -ljasper %s -lpng" % (jasperlib, libpnglib)
regex_subs = [
(r"^(\s*-L\.\s*-l\$\(LIBTARGET\))(\s*;.*)$",
r"\1 %s\2" % jasperlibs),
(r"^(\s*\$\(COMPRESSION_LIBS\))(\s*;.*)$",
r"\1 %s\2" % jasperlibs),
]
apply_regex_substitutions(os.path.join('ungrib', 'src', 'Makefile'),
regex_subs)
# patch arch/Config.pl script, so that run_cmd_qa receives all output to answer questions
patch_perl_script_autoflush(os.path.join("arch", "Config.pl"))
# configure
# determine build type option to look for
self.comp_fam = self.toolchain.comp_family()
build_type_option = None
if LooseVersion(self.version) >= LooseVersion("3.4"):
knownbuildtypes = {'smpar': 'serial', 'dmpar': 'dmpar'}
if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable
build_type_option = " Linux x86_64, Intel compiler"
elif self.comp_fam == toolchain.GCC: # @UndefinedVariable
if LooseVersion(self.version) >= LooseVersion("3.6"):
build_type_option = "Linux x86_64, gfortran"
else:
build_type_option = "Linux x86_64 g95"
else:
raise EasyBuildError(
"Don't know how to figure out build type to select.")
else:
knownbuildtypes = {'smpar': 'serial', 'dmpar': 'DM parallel'}
if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable
build_type_option = "PC Linux x86_64, Intel compiler"
elif self.comp_fam == toolchain.GCC: # @UndefinedVariable
build_type_option = "PC Linux x86_64, gfortran compiler,"
knownbuildtypes['dmpar'] = knownbuildtypes['dmpar'].upper()
else:
raise EasyBuildError(
"Don't know how to figure out build type to select.")
# check and fetch selected build type
bt = self.cfg['buildtype']
if bt not in knownbuildtypes.keys():
raise EasyBuildError(
"Unknown build type: '%s'. Supported build types: %s", bt,
knownbuildtypes.keys())
# fetch option number based on build type option and selected build type
build_type_question = r"\s*(?P<nr>[0-9]+).\s*%s\s*\(?%s\)?\s*\n" % (
build_type_option, knownbuildtypes[bt])
cmd = ' '.join(
[self.cfg['preconfigopts'], './configure', self.cfg['configopts']])
qa = {}
no_qa = [".*compiler is.*"]
std_qa = {
# named group in match will be used to construct answer
r"%s(.*\n)*Enter selection\s*\[[0-9]+-[0-9]+\]\s*:" % build_type_question:
"%(nr)s",
}
run_cmd_qa(cmd,
qa,
no_qa=no_qa,
std_qa=std_qa,
log_all=True,
simple=True)
# make sure correct compilers and compiler flags are being used
comps = {
'SCC': "%s -I$(JASPERINC) %s" % (os.getenv('CC'), libpnginc),
'SFC': os.getenv('F90'),
'DM_FC': os.getenv('MPIF90'),
'DM_CC': os.getenv('MPICC'),
'FC': os.getenv('MPIF90'),
'CC': os.getenv('MPICC'),
}
if self.toolchain.options.get('openmp', None):
comps.update({
'LDFLAGS':
'%s %s' %
(self.toolchain.get_flag('openmp'), os.environ['LDFLAGS'])
})
regex_subs = [(r"^(%s\s*=\s*).*$" % key, r"\1 %s" % val)
for (key, val) in comps.items()]
apply_regex_substitutions('configure.wps', regex_subs)
def configure_step(self):
"""Configure build:
- set required environment variables (for netCDF, JasPer)
- patch compile script and ungrib Makefile for non-default install paths of WRF and JasPer
- run configure script and figure how to select desired build option
- patch configure.wps file afterwards to fix 'serial compiler' setting
"""
# netCDF dependency check + setting env vars (NETCDF, NETCDFF)
set_netcdf_env_vars(self.log)
# WRF dependency check
wrf = get_software_root('WRF')
if wrf:
wrfdir = os.path.join(wrf, det_wrf_subdir(get_software_version('WRF')))
else:
raise EasyBuildError("WRF module not loaded?")
# patch compile script so that WRF is found
self.compile_script = "compile"
regex_subs = [(r"^(\s*set\s*WRF_DIR_PRE\s*=\s*)\${DEV_TOP}(.*)$", r"\1%s\2" % wrfdir)]
apply_regex_substitutions(self.compile_script, regex_subs)
# libpng dependency check
libpng = get_software_root('libpng')
zlib = get_software_root('zlib')
if libpng:
paths = [libpng]
if zlib:
paths.insert(0, zlib)
libpnginc = ' '.join(['-I%s' % os.path.join(path, 'include') for path in paths])
libpnglib = ' '.join(['-L%s' % os.path.join(path, 'lib') for path in paths])
else:
# define these as empty, assume that libpng will be available via OS (e.g. due to --filter-deps=libpng)
libpnglib = ""
libpnginc = ""
# JasPer dependency check + setting env vars
jasper = get_software_root('JasPer')
if jasper:
env.setvar('JASPERINC', os.path.join(jasper, "include"))
jasperlibdir = os.path.join(jasper, "lib")
env.setvar('JASPERLIB', jasperlibdir)
jasperlib = "-L%s" % jasperlibdir
else:
raise EasyBuildError("JasPer module not loaded?")
# patch ungrib Makefile so that JasPer is found
jasperlibs = "%s -ljasper %s -lpng" % (jasperlib, libpnglib)
regex_subs = [
(r"^(\s*-L\.\s*-l\$\(LIBTARGET\))(\s*;.*)$", r"\1 %s\2" % jasperlibs),
(r"^(\s*\$\(COMPRESSION_LIBS\))(\s*;.*)$", r"\1 %s\2" % jasperlibs),
]
apply_regex_substitutions(os.path.join('ungrib', 'src', 'Makefile'), regex_subs)
# patch arch/Config.pl script, so that run_cmd_qa receives all output to answer questions
patch_perl_script_autoflush(os.path.join("arch", "Config.pl"))
# configure
# determine build type option to look for
self.comp_fam = self.toolchain.comp_family()
build_type_option = None
if LooseVersion(self.version) >= LooseVersion("3.4"):
knownbuildtypes = {
'smpar': 'serial',
'dmpar': 'dmpar'
}
if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable
build_type_option = " Linux x86_64, Intel compiler"
elif self.comp_fam == toolchain.GCC: # @UndefinedVariable
build_type_option = "Linux x86_64 g95 compiler"
else:
raise EasyBuildError("Don't know how to figure out build type to select.")
else:
knownbuildtypes = {
'smpar': 'serial',
'dmpar': 'DM parallel'
}
if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable
build_type_option = "PC Linux x86_64, Intel compiler"
elif self.comp_fam == toolchain.GCC: # @UndefinedVariable
build_type_option = "PC Linux x86_64, gfortran compiler,"
knownbuildtypes['dmpar'] = knownbuildtypes['dmpar'].upper()
else:
raise EasyBuildError("Don't know how to figure out build type to select.")
# check and fetch selected build type
bt = self.cfg['buildtype']
if bt not in knownbuildtypes.keys():
raise EasyBuildError("Unknown build type: '%s'. Supported build types: %s", bt, knownbuildtypes.keys())
# fetch option number based on build type option and selected build type
build_type_question = "\s*(?P<nr>[0-9]+).\s*%s\s*\(?%s\)?\s*\n" % (build_type_option, knownbuildtypes[bt])
cmd = "./configure"
qa = {}
no_qa = [".*compiler is.*"]
std_qa = {
# named group in match will be used to construct answer
r"%s(.*\n)*Enter selection\s*\[[0-9]+-[0-9]+\]\s*:" % build_type_question: "%(nr)s",
}
run_cmd_qa(cmd, qa, no_qa=no_qa, std_qa=std_qa, log_all=True, simple=True)
# make sure correct compilers and compiler flags are being used
comps = {
'SCC': "%s -I$(JASPERINC) %s" % (os.getenv('CC'), libpnginc),
'SFC': os.getenv('F90'),
'DM_FC': os.getenv('MPIF90'),
'DM_CC': os.getenv('MPICC'),
'FC': os.getenv('MPIF90'),
'CC': os.getenv('MPICC'),
}
regex_subs = [(r"^(%s\s*=\s*).*$" % key, r"\1 %s" % val) for (key, val) in comps.items()]
apply_regex_substitutions('configure.wps', regex_subs)