Python ReferenceModelConfig Beispiele

Beispiel #1

Datei: reference_configs.py Projekt: clinicedc/edc-metadata-rules

def register_to_site_reference_configs():

    site_reference_configs.registry = {}

    reference = ReferenceModelConfig(
        name="edc_metadata_rules.CrfOne", fields=["f1", "f2", "f3"]
    )
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="edc_metadata_rules.CrfTwo", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="edc_metadata_rules.CrfThree", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="edc_metadata_rules.CrfFour", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="edc_metadata_rules.CrfFive", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="edc_metadata_rules.CrfSix", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="edc_metadata_rules.CrfSeven", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(
        name="edc_metadata_rules.CrfMissingManager", fields=["f1"]
    )
    site_reference_configs.register(reference)

Beispiel #2

def register_to_site_reference_configs():
    site_reference_configs.registry = {}

    reference = ReferenceModelConfig(name="review_dashboard_app.CrfOne", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="review_dashboard_app.CrfTwo", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="review_dashboard_app.CrfThree", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="review_dashboard_app.CrfFour", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="review_dashboard_app.CrfFive", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="review_dashboard_app.CrfSix", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="review_dashboard_app.CrfSeven", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(
        name="review_dashboard_app.CrfMissingManager", fields=["f1"]
    )
    site_reference_configs.register(reference)

Beispiel #3

Datei: test_case_mixin.py Projekt: clinicedc/edc-action-item

    def enroll(subject_identifier=None):
        subject_identifier = subject_identifier or "1111111"

        site_reference_configs.registry = {}
        reference = ReferenceModelConfig(
            name="edc_action_item.CrfLongitudinalOne",
            fields=["f1", "f2", "f3"])
        site_reference_configs.register(reference)

        site_visit_schedules._registry = {}
        site_visit_schedules.loaded = False
        site_visit_schedules.register(visit_schedule)

        site_reference_configs.register_from_visit_schedule(
            visit_models={
                "edc_appointment.appointment": "edc_metadata.subjectvisit"
            })

        subject_consent = SubjectConsent.objects.create(
            subject_identifier=subject_identifier,
            consent_datetime=get_utcnow())
        _, schedule = site_visit_schedules.get_by_onschedule_model(
            "edc_metadata.onschedule")
        schedule.put_on_schedule(
            subject_identifier=subject_consent.subject_identifier,
            onschedule_datetime=subject_consent.consent_datetime,
        )
        return subject_identifier

Beispiel #4

Datei: reference_model_configs.py Projekt: clinicedc/edc-reference

def register_configs():
    site_reference_configs.registry = {}
    site_reference_configs.loaded = False

    site_reference_configs.register_from_visit_schedule(
        visit_models={
            "edc_appointment.appointment": "reference_app.subjectvisit"
        })

    reference_config = ReferenceModelConfig(
        name="reference_app.testmodel",
        fields=["field_str", "report_datetime"])
    site_reference_configs.register(reference_config)

    reference_config = ReferenceModelConfig(
        name="reference_app.subjectrequisition.cd4", fields=["panel"])
    site_reference_configs.register(reference_config)

    reference_config = ReferenceModelConfig(
        name="reference_app.subjectrequisition.vl", fields=["panel"])
    site_reference_configs.register(reference_config)

    reference_config = ReferenceModelConfig(
        name="reference_app.subjectrequisition.wb", fields=["panel"])
    site_reference_configs.register(reference_config)

    configs = {
        "reference_app.crfone": [
            "field_str",
            "field_date",
            "field_datetime",
            "field_int",
        ],
    }

    for reference_name, fields in configs.items():
        site_reference_configs.add_fields_to_config(name=reference_name,
                                                    fields=fields)

Beispiel #5

def register_to_site_reference_configs():
    site_reference_configs.registry = {}

    reference = ReferenceModelConfig(name="data_manager_app.CrfOne", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="data_manager_app.CrfTwo", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="data_manager_app.CrfThree", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="data_manager_app.CrfFour", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="data_manager_app.CrfFive", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="data_manager_app.CrfSix", fields=["f1"])
    site_reference_configs.register(reference)

    reference = ReferenceModelConfig(name="data_manager_app.CrfSeven", fields=["f1"])
    site_reference_configs.register(reference)

Beispiel #6

Datei: reference_model_configs.py Projekt: botswana-harvard/bcpp-reference

from edc_reference import site_reference_configs, ReferenceModelConfig
from edc_visit_schedule.site_visit_schedules import site_visit_schedules

reference = ReferenceModelConfig(name='bcpp_subject.anonymousconsent',
                                 fields=['consent_datetime'])
site_reference_configs.register(reference)

site_reference_configs.register_from_visit_schedule(
    site_visit_schedules=site_visit_schedules)

configs = {
    'bcpp_subject.circumcision': ['circumcised'],
    'bcpp_subject.elisahivresult': ['hiv_result', 'hiv_result_datetime'],
    'bcpp_subject.hicenrollment': ['hic_permission'],
    'bcpp_subject.hivcareadherence':
    ['arv_evidence', 'ever_taken_arv', 'on_arv', 'medical_care'],
    'bcpp_subject.hivresult': ['hiv_result', 'hiv_result_datetime'],
    'bcpp_subject.hivresultdocumentation':
    ['result_date', 'result_recorded', 'result_doc_type'],
    'bcpp_subject.hivtestinghistory':
    ['verbal_hiv_result', 'other_record', 'has_tested', 'has_record'],
    'bcpp_subject.hivtestreview': ['hiv_test_date', 'recorded_hiv_result'],
    'bcpp_subject.medicaldiagnoses':
    ['cancer_record', 'heart_attack_record', 'tb_record'],
    'bcpp_subject.outpatientcare': ['govt_health_care'],
    'bcpp_subject.reproductivehealth': ['currently_pregnant', 'menopause'],
    'bcpp_subject.resourceutilization': ['out_patient', 'hospitalized'],
    'bcpp_subject.sexualbehaviour': ['last_year_partners', 'ever_sex'],
    'bcpp_subject.subjectvisit': ['survey_schedule', 'survey'],
}
for reference_name, fields in configs.items():

Beispiel #7

Datei: models.py Projekt: clinicedc/edc-lab

from edc_reference import ReferenceModelConfig, site_reference_configs
from edc_registration.model_mixins import UpdatesOrCreatesRegistrationModelMixin
from edc_sites.models import SiteModelMixin
from edc_visit_schedule.model_mixins import (
    OffScheduleModelMixin,
    OnScheduleModelMixin,
    SubjectOnScheduleModelMixin,
    VisitScheduleFieldsModelMixin,
    VisitScheduleMethodsModelMixin,
)
from edc_visit_tracking.model_mixins import VisitModelMixin

from edc_lab.model_mixins import RequisitionModelMixin

site_reference_configs.registry = {}
reference = ReferenceModelConfig(name="edc_lab.subjectrequisition.panel",
                                 fields=["panel"])
site_reference_configs.register(reference)
reference = ReferenceModelConfig(name="edc_lab.CrfOne", fields=["f1"])
site_reference_configs.register(reference)


class SubjectRequisitionManager(models.Manager):
    def get_by_natural_key(self, requisition_identifier, subject_identifier,
                           report_datetime):
        subject_visit = SubjectVisit.objects.get(
            subject_identifier=subject_identifier,
            report_datetime=report_datetime)
        return self.get(requisition_identifier=requisition_identifier,
                        subject_visit=subject_visit)