class IRDFFolder(Interface):
'''A folder containing RDF data sources.'''
contains('edrn.rdf.source')
title = schema.TextLine(title=_(u'Title'),
description=_(u'The name of this folder.'))
description = schema.Text(
title=_(u'Description'),
description=_(u'A short summary of this folder.'))
class IBodySystem(ISource):
'''Body systems.'''
titleURI = schema.TextLine(
title=_(u'Title URI'),
description=_(u'Uniform Resource Identifier for the title predicate.'))
descURI = schema.TextLine(
title=_(u'Description URI'),
description=_(
u'Uniform Resource Identifier for the description predicate.'))
class IDisease(ISource):
'''Disease.'''
titleURI = schema.TextLine(
title=_(u'Title URI'),
description=_(u'Uniform Resource Identifier for the title predicate.'))
descURI = schema.TextLine(
title=_(u'Description URI'),
description=_(
u'Uniform Resource Identifier for the description predicate.'))
icd9URI = schema.TextLine(
title=_(u'ICD9 URI'),
description=_(u'Uniform Resource Identifier for the ICD9 predicate.'))
icd10URI = schema.TextLine(
title=_(u'ICD10 URI'),
description=_(u'Uniform Resource Identifier for the ICD10 predicate.'))
bodySysURI = schema.TextLine(
title=_(u'Body System URI'),
description=_(
u'Uniform Resource Identifier for Body System predicates.'))
class ISource(Interface):
'''An abstract source of RDF.'''
title = schema.TextLine(title=_(u'Title'),
description=_(u'The name of this RDF source.'))
description = schema.Text(
title=_(u'Description'),
description=_(u'A short summary of this RDF source.'))
uriPrefix = schema.TextLine(
title=_(u'URI Prefix'),
description=_(u'Uniform Resource Identifier to prepend to locations.'))
typeURI = schema.TextLine(
title=_(u'Type URI'),
description=_(u"Uniform Resource Identifier of the source's type."))
class ISite(ISource):
'''Site.'''
titleURI = schema.TextLine(
title=_(u'Title URI'),
description=_(u'Uniform Resource Identifier for the title predicate.'))
abbrevNameURI = schema.TextLine(
title=_(u'Abbreviated Name URI'),
description=_(
u'Uniform Resource Identifier for the abbreviated name predicate.')
)
assocMemberSponsorURI = schema.TextLine(
title=_(u'Associate Members Sponsor URI'),
description=
_(u'Uniform Resource Identifier fo the predicate that identifies the sponsor for a site.'
))
fundingDateStartURI = schema.TextLine(
title=_(u'Funding Start Date URI'),
description=
_(u'Uniform Resource Identifier for the predicate that identifies the date funding started for the site.'
))
fundingDateFinishURI = schema.TextLine(
title=_(u'Funding Finish Date URI'),
description=
_(u'Uniform Resource Identifier for the predicate that identifies the date funding ended for the site.'
))
fwaNumberURI = schema.TextLine(
title=_(u'FWA Number URI'),
description=_(
u'Uniform Resource Identifier for the FWA number predicate.'))
piURI = schema.TextLine(
title=_(u'PI URI'),
description=
_(u'Uniform Resource Identifier for the Primary Investigator predicate.'
))
coPIURI = schema.TextLine(
title=_(u'Co-PI URI'),
description=
_(u'Uniform Resource Investigator for the Co-Primary Investigator predicate.'
))
coIURI = schema.TextLine(
title=_(u'Co-I URI'),
description=_(
u'Uniform Resource Identifier for the Co-Investigator predicate.'))
investigatorURI = schema.TextLine(
title=_(u'Investigator URI'),
description=_(
u'Uniform Resource Identifier for the Investigator predicate.'))
staffURI = schema.TextLine(
title=_(u'Staff URI'),
description=_(u'Uniform Resource Identifier for the staff predicate.'))
programURI = schema.TextLine(
title=_(u'Program URI'),
description=
_(u'Uniform Resource Identifier for predicate identifying the program description.'
))
urlURI = schema.TextLine(
title=_(u'URL URI'),
description=
_(u'Uniform Resource Identifier for the predicate identifying the site home page.'
))
memberTypeURI = schema.TextLine(
title=_(u'Member Type URI'),
description=
_(u'Uniform Resource Identifier for the predicate identifying the type of the EDRN member site.'
))
histNotesURI = schema.TextLine(
title=_(u'Historical Notes URI'),
description=_(
u'Uniform Resource Identifier for the historical notes predicate.')
)
class ICommittee(ISource):
'''Committee information generation'''
titlePredicateURI = schema.TextLine(
title=_(u'Title Predicate URI'),
description=_(u'Uniform Resource Identifier for the title predicate.'),
required=True,
)
abbreviatedNamePredicateURI = schema.TextLine(
title=_(u'Abbreviated Name Predicate URI'),
description=_(
u'Uniform Resource Identifier for the abbreviated name predicate.'
),
required=True,
)
committeeTypePredicateURI = schema.TextLine(
title=_(u'Committee Type Predicate URI'),
description=_(
u'Uniform Resource Identifier for the committee type predicate.'),
required=True,
)
chairPredicateURI = schema.TextLine(
title=_(u'Chair Predicate URI'),
description=_(u'Uniform Resource Identifier for the chair predicate.'),
required=True,
)
coChairPredicateURI = schema.TextLine(
title=_(u'Co-Chair Predicate URI'),
description=_(
u'Uniform Resource Identifier for the co-chair predicate.'),
required=True,
)
consultantPredicateURI = schema.TextLine(
title=_(u'Consultant Predicate URI'),
description=_(
u'Uniform Resource Identifier for the consultant predicate.'),
required=True,
)
memberPredicateURI = schema.TextLine(
title=_(u'Member Predicate URI'),
description=_(
u'Uniform Resource Identifier for the member predicate.'),
required=True,
)
class IRegisteredPerson(ISource):
'''Registered person.'''
firstNameURI = schema.TextLine(
title=_(u'First Name URI'),
description=_(
u'Uniform Resource Identifier for the first name predicate.'),
required=True,
)
middleNameURI = schema.TextLine(
title=_(u'Middle Name URI'),
description=_(
u'Uniform Resource Identifier for the middle name predicate.'),
required=True,
)
lastNameURI = schema.TextLine(
title=_(u'Last Name URI'),
description=_(
u'Uniform Resource Identifier for the last name predicate.'),
required=True,
)
phoneURI = schema.TextLine(
title=_(u'Phone URI'),
description=_(u'Uniform Resource Identifier for the phone predicate.'),
required=True,
)
emailURI = schema.TextLine(
title=_(u'Email URI'),
description=_(u'Uniform Resource Identifier for the email predicate.'),
required=True,
)
faxURI = schema.TextLine(
title=_(u'Fax URI'),
description=_(u'Uniform Resource Identifier for the fax predicate.'),
required=True,
)
specialtyURI = schema.TextLine(
title=_(u'Specialty URI'),
description=_(
u'Uniform Resource Identifier for the speciality predicate.'),
required=True,
)
photoURI = schema.TextLine(
title=_(u'Photo URI'),
description=_(
u'Uniform Resource Identifier for the photograph predicate.'),
required=True,
)
edrnTitleURI = schema.TextLine(
title=_(u'EDRN Title URI'),
description=_(
u'Uniform Resource Identifier for the EDRN title predicate.'),
required=True,
)
siteURI = schema.TextLine(
title=_(u'Site URI'),
description=_(u'Uniform Resource Identifier for the site predicate.'),
required=False,
)
userIDURI = schema.TextLine(
title=_(u'User ID URI'),
description=_(
u'Uniform Resource Identifier for the account name predicate.'),
required=False,
)
addr1URI = schema.TextLine(
title=_(u'Mailing Address Line 1 URI'),
description=_(
u'Uniform Resource Identifier for line 1 of the mailing address.'))
addr2URI = schema.TextLine(
title=_(u'Mailing Address Line 2 URI'),
description=_(
u'Uniform Resource Identifier for line 2 of the mailing address.'))
cityURI = schema.TextLine(
title=_(u'Mailing Address City URI'),
description=
_(u'Uniform Resource Identifier for the city of the mailing address predicate.'
))
stateURI = schema.TextLine(
title=_(u'Mailing Address State URI'),
description=
_(u'Uniform Resource Identifier for the state of the mailing address predicate.'
))
zipURI = schema.TextLine(
title=_(u'Mailing Address Post Code URI'),
description=
_(u'Uniform Resource Identifier for the post code (zip code) of the mailing address predicate.'
))
countryURI = schema.TextLine(
title=_(u'Mailing Address Country URI'),
description=
_(u'Uniform Resource Identifier for the country of the mailing address predicate.'
))
class IProtocol(ISource):
'''Protocol.'''
siteSpecURIPrefix = schema.TextLine(
title=_(u'Site-Specific URI Prefix'),
description=
_(u'Uniform Resource Identifier for the predicate that identifies site-specific protocol information.'
),
required=True,
)
titleURI = schema.TextLine(
title=_(u'Title URI'),
description=_(u'Uniform Resource Identifier for the title predicate.'),
required=True,
)
abstractURI = schema.TextLine(
title=_(u'Abstract URI'),
description=_(
u'Uniform Resource Identifier for the abstract predicate.'),
required=True,
)
involvedInvestigatorSiteURI = schema.TextLine(
title=_(u'Involved Investigator Site URI'),
description=
_(u'Uniform Resource Identifier for the involved investigator site predicate.'
),
required=True,
)
bmNameURI = schema.TextLine(
title=_(u'BM Name URI'),
description=_(
u'Uniform Resource Identifier for the BM name predicate.'),
required=True,
)
coordinateInvestigatorSiteURI = schema.TextLine(
title=_(u'Coordinating Investigator Site URI'),
description=_(
u'Uniform Resource Identifier for the coordinating site predicate.'
),
required=True,
)
leadInvestigatorSiteURI = schema.TextLine(
title=_(u'Lead Investigator Site URI'),
description=
_(u'Uniform Resource Identifier for the lead investigator site predicate.'
),
required=True,
)
collaborativeGroupTextURI = schema.TextLine(
title=_(u'Collaborative Group Text URI'),
description=
_(u'Uniform Resource Identifier for the collaborative group text predicate.'
),
required=True,
)
phasedStatusURI = schema.TextLine(
title=_(u'Phased Status URI'),
description=_(
u'Uniform Resource Identifier for the phased status predicate.'),
required=True,
)
aimsURI = schema.TextLine(
title=_(u'Aims URI'),
description=_(u'Uniform Resource Identifier for the aims predicate.'),
required=True,
)
analyticMethodURI = schema.TextLine(
title=_(u'Analytic Method URI'),
description=_(
u'Uniform Resource Identifier for the analytic method predicate.'),
required=True,
)
blindingURI = schema.TextLine(
title=_(u'Blinding URI'),
description=_(
u'Uniform Resource Identifier for the blinding predicate.'),
required=True,
)
cancerTypeURI = schema.TextLine(
title=_(u'Cancer Type URI'),
description=_(
u'Uniform Resource Identifier for the cancer type predicate.'),
required=True,
)
commentsURI = schema.TextLine(
title=_(u'Comments URI'),
description=_(
u'Uniform Resource Identifier for the comments predicate.'),
required=True,
)
dataSharingPlanURI = schema.TextLine(
title=_(u'Data Sharing Plan URI'),
description=_(
u'Uniform Resource Identifier for the data sharing plan predicate.'
),
required=True,
)
inSituDataSharingPlanURI = schema.TextLine(
title=_(u'In-Situ Data Sharing Plan URI'),
description=
_(u'Uniform Resource Identifier for the in-situ data sharing plan predicate.'
),
required=True,
)
finishDateURI = schema.TextLine(
title=_(u'Finish Date URI'),
description=_(
u'Uniform Resource Identifier for the finish date predicate.'),
required=True,
)
estimatedFinishDateURI = schema.TextLine(
title=_(u'Estimated Finish Date URI'),
description=
_(u'Uniform Resource Identifier for the estimated finish date predicate.'
),
required=True,
)
startDateURI = schema.TextLine(
title=_(u'Start Date URI'),
description=_(
u'Uniform Resource Identifier for the start date predicate.'),
required=True,
)
designURI = schema.TextLine(
title=_(u'Design URI'),
description=_(
u'Uniform Resource Identifier for the design predicate.'),
required=True,
)
fieldOfResearchURI = schema.TextLine(
title=_(u'Field of Research URI'),
description=_(
u'Uniform Resource Identifier for the field of research predicate.'
),
required=True,
)
abbreviatedNameURI = schema.TextLine(
title=_(u'Abbreviated Name URI'),
description=_(
u'Uniform Resource Identifier for the abbreviated name predicate.'
),
required=True,
)
objectiveURI = schema.TextLine(
title=_(u'Objective URI'),
description=_(
u'Uniform Resource Identifier for the objective predicate.'),
required=True,
)
projectFlagURI = schema.TextLine(
title=_(u'Project Flag URI'),
description=_(
u'Uniform Resource Identifier for the project flag predicate.'),
required=True,
)
protocolTypeURI = schema.TextLine(
title=_(u'Protocol Type URI'),
description=_(
u'Uniform Resource Identifier for the protocol type predicate.'),
required=True,
)
publicationsURI = schema.TextLine(
title=_(u'Publications URI'),
description=_(
u'Uniform Resource Identifier for the publications predicate.'),
required=True,
)
outcomeURI = schema.TextLine(
title=_(u'Outcome URI'),
description=_(
u'Uniform Resource Identifier for the outcome predicate.'),
required=True,
)
secureOutcomeURI = schema.TextLine(
title=_(u'Secure Outcome URI'),
description=_(
u'Uniform Resource Identifier for the secure outcome predicate.'),
required=True,
)
finalSampleSizeURI = schema.TextLine(
title=_(u'Final Sample Size URI'),
description=_(
u'Uniform Resource Identifier for the final sample size predicate.'
),
required=True,
)
plannedSampleSizeURI = schema.TextLine(
title=_(u'Planend Sample Size URI'),
description=
_(u'Uniform Resource Identifier for the planned sample size predicate.'
),
required=True,
)
isAPilotForURI = schema.TextLine(
title=_(u'Is A Pilot URI'),
description=_(
u'Uniform Resource Identifier for the "is a pilot" predicate.'),
required=True,
)
obtainsDataFromURI = schema.TextLine(
title=_(u'Obtains Data From URI'),
description=
_(u'Uniform Resource Identifier for the "obtains data from" predicate.'
),
required=True,
)
providesDataToURI = schema.TextLine(
title=_(u'Provides Data To URI'),
description=_(
u'Uniform Resource Identifier for the "provides data to" predicate.'
),
required=True,
)
contributesSpecimensURI = schema.TextLine(
title=_(u'Contributes Sepcimens URI'),
description=
_(u'Uniform Resource Identifier for the "contributes specimens" predicate.'
),
required=True,
)
obtainsSpecimensFromURI = schema.TextLine(
title=_(u'Obtains Specimens From URI'),
description=
_(u'Uniform Resource Identifier for the "obtains specimens from" predicate.'
),
required=True,
)
hasOtherRelationshipURI = schema.TextLine(
title=_(u'Has Other Relationship URI'),
description=
_(u'Uniform Resource Identifier for the "has other relationship" predicate.'
),
required=True,
)
animalSubjectTrainingReceivedURI = schema.TextLine(
title=_(u'Animal Subject Training Received URI'),
description=
_(u'Uniform Resource Identifier for the predicate that indicates if animal subject training as been received.'
),
required=True,
)
humanSubjectTrainingReceivedURI = schema.TextLine(
title=_(u'Human Subject Training Received URI'),
description=
_(u'Uniform Resource Identifier for the predicate that indicates if human subject training as been received.'
),
required=True,
)
irbApprovalNeededURI = schema.TextLine(
title=_(u'IRB Approval Needed URI'),
description=
_(u'Uniform Resource Identifier for the predicate that indicates if IRB approval is still needed.'
),
required=True,
)
currentIRBApprovalDateURI = schema.TextLine(
title=_(u'Current IRB Approval Date URI'),
description=
_(u'Uniform Resource Identifier for the predicate that tells the current IRB approval date.'
),
required=True,
)
originalIRBApprovalDateURI = schema.TextLine(
title=_(u'Original IRB Approval Date URI'),
description=
_(u'Uniform Resource Identifier for the predicate that tells of the original date of IRB approval.'
),
required=True,
)
irbExpirationDateURI = schema.TextLine(
title=_(u'IRB Expiration Date URI'),
description=
_(u'Uniform Resource Identifier for the predicate that tells when the IRB will expire.'
),
required=True,
)
generalIRBNotesURI = schema.TextLine(
title=_(u'General IRB Notes URI'),
description=
_(u'Uniform Resource Identifier for the predicate that lists general notes about the IRB.'
),
required=True,
)
irbNumberURI = schema.TextLine(
title=_(u'IRB Number URI'),
description=
_(u'Uniform Resource Identifier for the predicate that identifies the IRB number.'
),
required=True,
)
siteRoleURI = schema.TextLine(
title=_(u'Site Role URI'),
description=
_(u'Uniform Resource Identifier for the predicate that lists the roles the site participates in.'
),
required=True,
)
reportingStageURI = schema.TextLine(
title=_(u'Report Stage URI'),
description=
_(u'Uniform Resource Identifier for the predicate that names the stages of reporting.'
),
required=True,
)
eligibilityCriteriaURI = schema.TextLine(
title=_(u'Eligibility Criteria URI'),
description=
_(u'Uniform Resource Identifier for the predicate that identifies the eligibility criteria.'
),
required=True,
)
from edrn.rdf.config import PROJECTNAME
from edrn.rdf.interfaces import IBodySystem
from Products.Archetypes import atapi
from edrn.rdf.content import base
from Products.ATContentTypes.content.schemata import finalizeATCTSchema
from zope.interface import implements
from edrn.rdf import EDRNRDFMessageFactory as _
BodySystemSchema = base.SourceSchema.copy() + atapi.Schema((
atapi.StringField(
'titleURI',
required=True,
storage=atapi.AnnotationStorage(),
widget=atapi.StringWidget(
label=_(u'Title URI'),
description=_(
u'Uniform Resource Identifier for the title predicate.'),
),
),
atapi.StringField(
'descURI',
required=True,
storage=atapi.AnnotationStorage(),
widget=atapi.StringWidget(
label=_(u'Description URI'),
description=_(
u'Uniform Resource Identifier for the description predicate.'),
),
),
))
class IPublication(ISource):
'''Publication.'''
titleURI = schema.TextLine(
title=_(u'Title URI'),
description=_(u'Uniform Resource Identifier for the title predicate.'))
descURI = schema.TextLine(
title=_(u'Description URI'),
description=_(
u'Uniform Resource Identifier for the description predicate.'))
abstractURI = schema.TextLine(
title=_(u'Abstract URI'),
description=_(
u'Uniform Resource Identifier for the abstract predicate.'))
authorURI = schema.TextLine(
title=_(u'Author URI'),
description=_(
u'Uniform Resource Identifier for the author predicate.'))
issueURI = schema.TextLine(
title=_(u'Issue URI'),
description=_(u'Uniform Resource Identifier for the issue predicate.'))
journalURI = schema.TextLine(
title=_(u'Journal URI'),
description=_(
u'Uniform Resource Identifier for the journal predicate.'))
pmidURI = schema.TextLine(
title=_(u'PubMed ID URI'),
description=_(
u'Uniform Resource Identifier for the PubMed ID predicate.'))
pubURLURI = schema.TextLine(
title=_(u'Publication URL URI'),
description=_(
u'Uniform Resource Identifier for the publication URL predicate.'))
volumeURI = schema.TextLine(
title=_(u'Volume URI'),
description=_(
u'Uniform Resource Identifier for the volume predicate.'))
yearURI = schema.TextLine(
title=_(u'Year URI'),
description=_(u'Uniform Resource Identifier for the year predicate.'))
EDRN RDF Service: content base classes
'''
from edrn.rdf import EDRNRDFMessageFactory as _
from edrn.rdf.interfaces import ISource
from Products.Archetypes import atapi
from Products.ATContentTypes.content import base, schemata
from zope.interface import implements
SourceSchema = schemata.ATContentTypeSchema.copy() + atapi.Schema((
atapi.StringField(
'uriPrefix',
required=True,
storage=atapi.AnnotationStorage(),
widget=atapi.StringWidget(
label=_(u'URI Prefix'),
description=_(u'Uniform Resource Identifier to prepend to locations.'),
),
),
atapi.StringField(
'typeURI',
required=True,
storage=atapi.AnnotationStorage(),
widget=atapi.StringWidget(
label=_(u'Type URI'),
description=_(u"Uniform Resource Identifier of the source's type."),
),
),
))
SourceSchema['title'].storage = atapi.AnnotationStorage()
from edrn.rdf import EDRNRDFMessageFactory as _
from edrn.rdf.config import PROJECTNAME
from edrn.rdf.content import base
from edrn.rdf.interfaces import IDisease
from Products.Archetypes import atapi
from Products.ATContentTypes.content.schemata import finalizeATCTSchema
from zope.interface import implements
DiseaseSchema = base.SourceSchema.copy() + atapi.Schema((
atapi.StringField(
'titleURI',
required=True,
storage=atapi.AnnotationStorage(),
widget=atapi.StringWidget(
label=_(u'Title URI'),
description=_(
u'Uniform Resource Identifier for the title predicate.'),
),
),
atapi.StringField(
'descURI',
required=True,
storage=atapi.AnnotationStorage(),
widget=atapi.StringWidget(
label=_(u'Description URI'),
description=_(
u'Uniform Resource Identifier for the description predicate.'),
),
),
atapi.StringField(
from edrn.rdf import EDRNRDFMessageFactory as _
from edrn.rdf.config import PROJECTNAME
from edrn.rdf.content import base
from edrn.rdf.interfaces import IPublication
from Products.Archetypes import atapi
from Products.ATContentTypes.content.schemata import finalizeATCTSchema
from zope.interface import implements
PublicationSchema = base.SourceSchema.copy() + atapi.Schema((
atapi.StringField(
'titleURI',
required=True,
storage=atapi.AnnotationStorage(),
widget=atapi.StringWidget(
label=_(u'Title URI'),
description=_(u'Uniform Resource Identifier for the title predicate.'),
),
),
atapi.StringField(
'descURI',
required=True,
storage=atapi.AnnotationStorage(),
widget=atapi.StringWidget(
label=_(u'Description URI'),
description=_(u'Uniform Resource Identifier for the description predicate.'),
),
),
atapi.StringField(
'abstractURI',
required=True,
from edrn.rdf import EDRNRDFMessageFactory as _
from edrn.rdf.config import PROJECTNAME
from edrn.rdf.content import base
from edrn.rdf.interfaces import IRegisteredPerson
from Products.Archetypes import atapi
from Products.ATContentTypes.content.schemata import finalizeATCTSchema
from zope.interface import implements
RegisteredPersonSchema = base.SourceSchema.copy() + atapi.Schema((
atapi.StringField(
'firstNameURI',
required=True,
storage=atapi.AnnotationStorage(),
widget=atapi.StringWidget(
label=_(u'First Name URI'),
description=_(
u'Uniform Resource Identifier for the first name predicate.'),
),
),
atapi.StringField(
'middleNameURI',
required=True,
storage=atapi.AnnotationStorage(),
widget=atapi.StringWidget(
label=_(u'Middle Name URI'),
description=_(
u'Uniform Resource Identifier for the middle name predicate.'),
),
),
atapi.StringField(
from edrn.rdf import EDRNRDFMessageFactory as _
from edrn.rdf.config import PROJECTNAME
from edrn.rdf.content import base
from edrn.rdf.interfaces import ISite
from Products.Archetypes import atapi
from Products.ATContentTypes.content.schemata import finalizeATCTSchema
from zope.interface import implements
SiteSchema = base.SourceSchema.copy() + atapi.Schema((
atapi.StringField(
'titleURI',
required=True,
storage=atapi.AnnotationStorage(),
widget=atapi.StringWidget(
label=_(u'Title URI'),
description=_(
u'Uniform Resource Identifier for the title predicate.'),
),
),
atapi.StringField(
'abbrevNameURI',
required=True,
storage=atapi.AnnotationStorage(),
widget=atapi.StringWidget(
label=_(u'Abbreviated Name URI'),
description=
_(u'Uniform Resource Identifier for the abbreviated name predicate.'
),
),
),