from egasub.ega.entities.dataset import Dataset
from egasub.ega.entities.dataset_link import DatasetLink
from egasub.ega.entities.attribute import Attribute
links = [DatasetLink('label 1', 'url1'), DatasetLink('label 2', 'url2')]
attributes = [
Attribute('The tag 1', 'The value 1', 'an unit'),
Attribute('The tag 2', 'The value 2', 'an unit')
]
dataset = Dataset('an alias', [3, 4, 5], 3, [6, 1, 4], [8, 21, 4], 'a title',
links, attributes)
def test_dataset_type_ids():
assert [3, 4, 5] == dataset.dataset_type_ids
def test_policy_id():
assert 3 == dataset.policy_id
def test_runs_references():
assert [6, 1, 4] == dataset.runs_references
def test_analysis_references():
assert [8, 21, 4] == dataset.analysis_references
def test_dataset_links():
from egasub.ega.entities.sample import Sample
from egasub.ega.entities.attribute import Attribute
attributes = [Attribute('tag1', 'value1'), Attribute('tag2', 'value2')]
sample = Sample('an alias', 'the title', 'the description', 123, 2, 'head',
'test line', 'test region', 'a phenotype', 33,
'anonymized name', 22, 10, 'some details', attributes, 33)
def test_title():
assert 'the title' == sample.title
def test_description():
assert 'the description' == sample.description
def test_case_or_control_id():
assert 123 == sample.case_or_control_id
def test_gender_id():
assert 2 == sample.gender_id
def test_organism_part():
assert 'head' == sample.organism_part
def test_cell_line():
assert 'test line' == sample.cell_line
from egasub.ega.entities.attribute import Attribute
attribute = Attribute('The tag', 'The value', 'an unit')
def test_tag():
assert 'The tag' == attribute.tag
def test_value():
assert 'The value' == attribute.value
def test_unit():
assert 'an unit' == attribute.unit
def test_to_dict():
assert cmp({
'tag': 'The tag',
'value': 'The value',
'unit': 'an unit'
}, attribute.to_dict()) == 0
def test_to_xml():
assert attribute.to_xml(
) == '<TAG>The tag</TAG>\n<VALUE>The value</VALUE>\n<UNIT>an unit</UNIT>\n'
def test_from_dict():