def main():
progname = os.path.basename(sys.argv[0])
usage = """prog <projection file> <particles file>
Compare different similarity metrics for a given particle stack. Note that all particles and projections are
read into memory. Do not use it on large sets of particles !!!
"""
parser = EMArgumentParser(usage=usage,version=EMANVERSION)
parser.add_argument("--ppid", type=int, help="Set the PID of the parent process, used for cross platform PPID",default=-1)
(options, args) = parser.parse_args()
if len(args)<2 :
print("Error, please specify projection file and particles file")
sys.exit(1)
logid=E2init(sys.argv,options.ppid)
em_app = EMApp()
window = EM3DGLWidget() #TODO: see if this should be a subclass of EMSymViewerWidget instead
explorer = EMCmpExplorer(window)
window.set_model(explorer)
explorer.set_data(args[0],args[1])
em_app.show()
em_app.execute()
E2end(logid)
def main():
progname = os.path.basename(sys.argv[0])
usage = """prog <simmx file> <projection file> <particles file>
This program allows you to look at per-particle classification based on a pre-computed similarity
matrix. If a particle seems to be mis-classified, you can use this program to help figure out
why. It will display a single asymmetric triangle on the unit sphere, with cylinders representing
the similarity value for the selected particle vs. each possible reference projection. Use the
normal middle-click on the asymmetric unit viewer for more options.
"""
parser = EMArgumentParser(usage=usage, version=EMANVERSION)
parser.add_argument(
"--ppid",
type=int,
help="Set the PID of the parent process, used for cross platform PPID",
default=-1)
parser.add_argument(
"--verbose",
"-v",
dest="verbose",
action="store",
metavar="n",
type=int,
default=0,
help=
"verbose level [0-9], higner number means higher level of verboseness")
(options, args) = parser.parse_args()
logid = E2init(sys.argv, options.ppid)
em_app = EMApp()
window = EMSymViewerWidget()
explorer = EMSimmxExplorer(window)
window.model = explorer
if len(args) > 0: explorer.set_simmx_file(args[0])
if len(args) > 1: explorer.set_projection_file(args[1])
if len(args) > 2: explorer.set_particle_file(args[2])
em_app.show()
em_app.execute()
E2end(logid)
def main():
progname = os.path.basename(sys.argv[0])
usage = progname + """ [options]
A tool for displaying EMAN2 command history
"""
parser = EMArgumentParser(usage=usage)
parser.add_argument(
"--gui",
"-g",
default=False,
action="store_true",
help="Open history in an interface with a sortable table.")
parser.add_argument("--all",
"-a",
default=False,
action="store_true",
help="Show for all directories.")
parser.add_argument(
"--ppid",
type=int,
help="Set the PID of the parent process, used for cross platform PPID",
default=-1)
parser.add_argument(
"--verbose",
"-v",
dest="verbose",
action="store",
metavar="n",
type=int,
default=0,
help=
"verbose level [0-9], higner number means higher level of verboseness")
(options, args) = parser.parse_args()
if options.gui:
from eman2_gui.emapplication import EMApp
app = EMApp()
hist = HistoryForm(app, os.getcwd())
hist.form.show()
hist.form.raise_()
app.show()
app.execute()
else:
print_to_std_out(options.all)
src_flags.append(EULER_XYZ)
self.src_strings = []
self.src_map = {}
for i in src_flags:
self.src_strings.append(str(i))
self.src_map[str(i)] = i
def setColors(self, colors, current_color):
a = 0
for i in colors:
self.cbb.addItem(i)
if (i == current_color):
self.cbb.setCurrentIndex(a)
a += 1
def set_scale(self, newscale):
self.scale.setValue(newscale)
# This is just for testing, of course
if __name__ == '__main__':
from eman2_gui.emapplication import EMApp
from eman2_gui.emimage3d import EMImage3DWidget
em_app = EMApp()
window = EMImage3DWidget()
hello_world = EM3DHelloWorld(window)
window.add_model(hello_world)
em_app.show()
em_app.execute()
