def menuFileOpen(self,x):
if self.particles!=None:
QtGui.QMessageBox.warning(None,"Error","%s already contains a stack of particles. A new folder is required to start with a new stack of particles. Rerun without --path option."%self.path)
return
self.dialog = embrowser.EMBrowserWidget(withmodal=True,multiselect=False)
QtCore.QObject.connect(self.dialog,QtCore.SIGNAL("ok"),self.gotPath)
QtCore.QObject.connect(self.dialog,QtCore.SIGNAL("cancel"),self.gotPath)
self.dialog.show()
def main():
progname = os.path.basename(sys.argv[0])
usage = """prog [options] <image file> ...
This program can be used to visualize most files used in EMAN2. Running it without arguments
will open a browser window with more flexible functionality than the command-line.
"""
global app, win, options
parser = EMArgumentParser(usage=usage, version=EMANVERSION)
parser.add_argument(
"--classmx",
type=str,
help=
"<classmx>,<#> Show particles in one class from a classification matrix. Pass raw particle file as first argument to command."
)
parser.add_argument(
"--classes",
type=str,
help="<rawptcl>,<classmx> Show particles associated class-averages")
parser.add_argument("--pdb",
type=str,
help="<pdb file> Show PDB structure.")
parser.add_argument("--singleimage",
action="store_true",
default=False,
help="Display a stack in a single image view")
parser.add_argument(
"--plot",
action="store_true",
default=False,
help="Data file(s) should be plotted rather than displayed in 2-D")
parser.add_argument(
"--hist",
action="store_true",
default=False,
help=
"Data file(s) should be plotted as a histogram rather than displayed in 2-D."
)
parser.add_argument(
"--plot3d",
action="store_true",
default=False,
help="Data file(s) should be plotted rather than displayed in 3-D")
parser.add_argument(
"--fullrange",
action="store_true",
default=False,
help=
"A specialized flag that disables auto contrast for the display of particles stacks and 2D images only."
)
parser.add_argument("--newwidget",
action="store_true",
default=False,
help="Use the new 3D widgetD. Highly recommended!!!!")
parser.add_argument(
"--ppid",
type=int,
help="Set the PID of the parent process, used for cross platform PPID",
default=-2)
parser.add_argument(
"--verbose",
"-v",
dest="verbose",
action="store",
metavar="n",
type=int,
default=0,
help=
"verbose level [0-9], higher number means higher level of verboseness")
(options, args) = parser.parse_args()
# logid=E2init(sys.argv)
app = EMApp()
#gapp = app
#QtWidgets.QApplication(sys.argv)
win = []
if options.fullrange:
print(
"""The --fullrange option has been removed, and replaced with an option in user preferences.
To set your preferences for full-range 2-D display, please run:
e2procjson.py --setoption display2d.autocontrast:true
""")
sys.exit(0)
if len(args) < 1:
global dialog
file_list = []
dialog = embrowser.EMBrowserWidget(withmodal=False, multiselect=False)
dialog.show()
try:
dialog.raise_()
# QtCore.QObject.connect(dialog,QtCore.SIGNAL("ok"),on_browser_done)
# QtCore.QObject.connect(dialog,QtCore.SIGNAL("cancel"),on_browser_cancel)
except:
pass
elif options.pdb:
load_pdb(args, app)
elif options.plot:
plot(args, app)
elif options.hist:
hist(args, app)
elif options.plot3d:
plot_3d(args, app)
elif options.classes:
options.classes = options.classes.split(",")
imgs = EMData.read_images(args[0])
display(imgs, app, args[0])
win[0].child.mousedown.connect(lambda a, b: selectclass(
options.classes[0], options.classes[1], a, b))
try:
out = open("selected.lst", "w")
out.write("#LST\n")
out.close()
except:
pass
elif options.classmx:
options.classmx = options.classmx.split(",")
clsnum = int(options.classmx[1])
imgs = getmxim(args[0], options.classmx[0], clsnum)
display(imgs, app, args[0])
else:
for i in args:
if not file_exists(i):
print("%s doesn't exist" % i)
sys.exit(1)
display_file(i,
app,
options.singleimage,
usescenegraph=options.newwidget)
app.exec_()