def wt_similarity(x, matrix='blosum62'):
x1 = x.peptide
x2 = x.wt
#print(x1,x2)
matrix = tepitope.get_matrix(matrix)
return tepitope.similarity_score(matrix, x1, x2)
def virus_similarity(x, matrix='blosum62'):
if x.virus_match is None:
return
x1 = x.peptide
x2 = x.virus_match
matrix = tepitope.get_matrix(matrix)
return tepitope.similarity_score(matrix, x1, x2)
def virus_similarity(x, matrix='pbmec'):
if x.self_match is None:
return
x1 = x.peptide
x2 = x.virus_match
return tepitope.similarity_score(tepitope.blosum62, x1, x2)
def wt_similarity(x, matrix='pbmec'):
x1 = x.peptide
x2 = x.wt
#print x1,x2
#print pbmec_score(x1, x2), pbmec_score(x1, x1), pbmec_score(x1, x2)/pbmec_score(x1, x1)
return tepitope.similarity_score(tepitope.blosum62, x1, x2)