def load_jobs(self):
# I want a single phylognetic tree for each cog
from ete3.tools.phylobuild_lib.workflow.genetree import pipeline
for co in self.cogs:
# Register a new msf task for each COG, using the same
# config file but opening an new tree reconstruction
# thread.
job = Msf(set(co), set(), seqtype = self.seqtype)
job.main_tree = None
job.threadid = generate_runid()
job.configid = self.conf["_configid"]
# This converts the job in a workflow job. As soon as a
# task is done, it will be automatically processed and the
# new tasks will be registered as new jobs.
job.task_processor = pipeline
job.target_wkname = self.genetree_workflow
self.jobs.append(job)
self.cog_ids.add(job.nodeid)
def load_jobs(self):
# I want a single phylognetic tree for each cog
from ete3.tools.phylobuild_lib.workflow.genetree import pipeline
for co in self.cogs:
# Register a new msf task for each COG, using the same
# config file but opening an new tree reconstruction
# thread.
job = Msf(set(co), set(), seqtype=self.seqtype)
job.main_tree = None
job.threadid = generate_runid()
job.configid = self.conf["_configid"]
# This converts the job in a workflow job. As soon as a
# task is done, it will be automatically processed and the
# new tasks will be registered as new jobs.
job.task_processor = pipeline
job.target_wkname = self.genetree_workflow
self.jobs.append(job)
self.cog_ids.add(job.nodeid)
