Beispiel #1
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 def test_omim(self):
     self.assertEqual(
         oxo.uri_to_oxo_format(
             "http://purl.obolibrary.org/obo/OMIM_314580"), "OMIM:314580")
     self.assertEqual(
         oxo.uri_to_oxo_format("http://identifiers.org/omim/314580"),
         "OMIM:314580")
Beispiel #2
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 def test_mesh(self):
     self.assertEqual(
         oxo.uri_to_oxo_format(
             "http://purl.obolibrary.org/obo/MESH_D002277"), "MeSH:D002277")
     self.assertEqual(
         oxo.uri_to_oxo_format("http://identifiers.org/mesh/D002277"),
         "MeSH:D002277")
Beispiel #3
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 def test_ordo(self):
     self.assertEqual(
         oxo.uri_to_oxo_format("http://www.orpha.net/ORDO/Orphanet_140162"),
         "Orphanet:140162")
Beispiel #4
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 def test_nonexistent(self):
     self.assertEqual(oxo.uri_to_oxo_format("not_a_real_uri"), None)
Beispiel #5
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 def test_hp(self):
     self.assertEqual(
         oxo.uri_to_oxo_format("http://purl.obolibrary.org/obo/HP_0030731"),
         "HP:0030731")
Beispiel #6
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 def test_efo(self):
     self.assertEqual(
         oxo.uri_to_oxo_format("http://www.ebi.ac.uk/efo/EFO_0000313"),
         "EFO:0000313")
Beispiel #7
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 def test_ordo(self):
     self.assertEqual(oxo.uri_to_oxo_format("http://www.orpha.net/ORDO/Orphanet_140162"),
                      "Orphanet:140162")
Beispiel #8
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 def test_mondo(self):
     self.assertEqual(oxo.uri_to_oxo_format("http://purl.obolibrary.org/obo/MONDO_0019531"),
                      "MONDO:0019531")
Beispiel #9
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 def test_nonexistent(self):
     self.assertEqual(oxo.uri_to_oxo_format("not_a_real_uri"),
                      None)
Beispiel #10
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 def test_hp(self):
     self.assertEqual(oxo.uri_to_oxo_format("http://purl.obolibrary.org/obo/HP_0030731"),
                      "HP:0030731")
Beispiel #11
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 def test_mesh(self):
     self.assertEqual(oxo.uri_to_oxo_format("http://purl.obolibrary.org/obo/MESH_D002277"),
                      "MeSH:D002277")
     self.assertEqual(oxo.uri_to_oxo_format("http://identifiers.org/mesh/D002277"),
                      "MeSH:D002277")
Beispiel #12
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 def test_efo(self):
     self.assertEqual(oxo.uri_to_oxo_format("http://www.ebi.ac.uk/efo/EFO_0000313"),
                      "EFO:0000313")
Beispiel #13
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 def test_omim(self):
     self.assertEqual(oxo.uri_to_oxo_format("http://purl.obolibrary.org/obo/OMIM_314580"),
                      "OMIM:314580")
     self.assertEqual(oxo.uri_to_oxo_format("http://identifiers.org/omim/314580"),
                      "OMIM:314580")
Beispiel #14
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 def test_mondo(self):
     self.assertEqual(
         oxo.uri_to_oxo_format(
             "http://purl.obolibrary.org/obo/MONDO_0019531"),
         "MONDO:0019531")