def run(i_cv):
N_SIG = 15000
N_BKG = N_SIG
N_SAMPLES = N_SIG + N_BKG
mix = N_SIG / N_SAMPLES
model_name = 'GradientBoosting'
directory = os.path.join(DIRECTORY, f'cv_{i_cv}')
os.makedirs(directory, exist_ok=True)
print(f'running iter {i_cv}...')
results = {'i_cv': i_cv}
seed = SEED + 5 * i_cv
train_seed = seed
test_seed = seed + 1
# Generate training data
generator = Generator(train_seed)
z_train = generator.sample_nuisance(N_SIG)
X_train, y_train = generator.sample_event(z_train, mix, N_SAMPLES)
# Train classifier
model = GradientBoostingClassifier(n_estimators=400, learning_rate=5e-2)
model.fit(X_train, y_train)
# Generate testing data
generator = Generator(test_seed)
z_test = generator.sample_nuisance(N_SIG)
X_test, y_test = generator.sample_event(z_test, mix, N_SAMPLES)
# Evaluation
r = evaluate_classifier(model,
X_train,
y_train,
prefix='train',
model_name=model_name,
directory=directory)
results.update(r)
r = evaluate_classifier(model,
X_test,
y_test,
prefix='test',
model_name=model_name,
directory=directory)
results.update(r)
evaluate_pivotal(model,
generator,
prefix='test',
model_name=model_name,
directory=directory)
return results
def evaluate_parameters():
X,y = get_train_data(limit=25)
scores = []
scores_std = []
print('Start learning...')
forests = [70]
rbm_components = [1100]
rbm_learning_rate = [0.06]
rbm_n_iter = [20]
it = itertools.product(forests,rbm_components,rbm_learning_rate,rbm_n_iter)
for (trees,components,learning_rate,n_iter) in it:
classifier = get_classifier(trees,components,learning_rate,n_iter)
name = "plots_pipeline/pipeline_{}.png".format(trees)
e.evaluate_classifier(classifier,X,y, name=name)
def evaluate_parameters():
X, y = get_train_data(limit=25)
scores = []
scores_std = []
print('Start learning...')
forests = [70]
rbm_components = [1100]
rbm_learning_rate = [0.06]
rbm_n_iter = [20]
it = itertools.product(forests, rbm_components, rbm_learning_rate,
rbm_n_iter)
for (trees, components, learning_rate, n_iter) in it:
classifier = get_classifier(trees, components, learning_rate, n_iter)
name = "plots_pipeline/pipeline_{}.png".format(trees)
e.evaluate_classifier(classifier, X, y, name=name)
def run_arc_test(X_train, y_train, X_test, y_test, params, algo_name):
X_train_nn = np.array(X_train).T
y_train_nn = np.array(y_train).reshape(-1,1).T
X_test_nn = np.array(X_test).T
y_test_nn = np.array(y_test).reshape(-1,1).T
for layer_dims in params['arcs']:
layer_dims = list(layer_dims)
y_score, param_dict, costs = simple_ann.train_network(X_train_nn, y_train_nn, X_test_nn, y_test_nn, layer_dims, num_iterations=params['num_iter'], num_checkpoints=params['num_iter']/params['checkpoints'], c_plot=False, learning_rate=params['learning_rate'], learn_adjust = params['learn_adjust'], weights = params['weights'])
_, y_score_p = simple_ann.forward_propagation(X_test_nn, param_dict[params['num_iter']], layer_dims)
y_score = (y_score_p > 0.5).astype(float)
print('\tPredictions == 1: ', y_score.sum())
text = '%s_test_%s' %(algo_name, str(layer_dims))
print('-------------------------------')
print('\t\t%s\t\t'%text)
print('-------------------------------')
evaluate_classifier(np.array(y_test_nn).reshape(1,-1), y_score.reshape(1,-1))
print('\n\n')
def evaluate_with_comparison(networks, dataloader, comparison_dataloader=None, **options):
# comparison_dataloader = get_comparison_dataloader(**options)
# if comparison_dataloader:
# options['fold'] = 'openset_{}'.format(comparison_dataloader.dsf.name)
options['fold'] = 'openset_{}'.format(options['data_dir'].split('/')[-1])
if options.get('mode'):
options['fold'] += '_{}'.format(options['mode'])
if options.get('aux_dataset'):
aux_dataset = CustomDataloader(options['aux_dataset'])
options['fold'] = '{}_{}'.format(options.get('fold'), aux_dataset.dsf.count())
new_results = evaluation.evaluate_classifier(networks, dataloader, comparison_dataloader, **options)
if comparison_dataloader is not None:
openset_results = evaluation.evaluate_openset(networks, dataloader, comparison_dataloader, **options)
new_results[options['fold']].update(openset_results)
return new_results[options['fold']]
comparison_dataloader = None
if options['comparison_dataset']:
comparison_options = options.copy()
comparison_options['dataset'] = options['comparison_dataset']
comparison_dataloader = CustomDataloader(last_batch=True,
shuffle=False,
**comparison_options)
comparison_name = options['comparison_dataset'].split('/')[-1].split(
'.')[0]
labels_dir = os.path.join(options['result_dir'], 'labels')
if os.path.exists(labels_dir):
label_count = len(os.listdir(labels_dir))
else:
label_count = 0
# Hack: ignore the label count
"""
options['fold'] = 'openset_{}_{:04d}'.format(comparison_name, label_count)
"""
options['fold'] = 'openset_{}'.format(comparison_name)
new_results = evaluate_classifier(networks, dataloader, comparison_dataloader,
**options)
if options['comparison_dataset']:
openset_results = evaluate_openset(networks, dataloader,
comparison_dataloader, **options)
pprint(openset_results)
new_results[options['fold'] + '_openset'] = openset_results
new_results[options['fold']]['active_learning_label_count'] = label_count
save_evaluation(new_results, options['result_dir'], options['epoch'])
def run(i_cv):
N_SIG = 15000
N_BKG = N_SIG
N_SAMPLES = N_SIG + N_BKG
mix = N_SIG / N_SAMPLES
model_name = 'PivotClassifier'
directory = os.path.join(DIRECTORY, f'cv_{i_cv}')
os.makedirs(directory, exist_ok=True)
print(f'running iter {i_cv}...')
results = {'i_cv': i_cv}
seed = SEED + 5 * i_cv
train_seed = seed
test_seed = seed + 1
# Generate training data
generator = Generator(train_seed)
z_train = generator.sample_nuisance(N_SIG)
X_train, y_train = generator.sample_event(z_train, mix, N_SAMPLES)
z_train = np.concatenate((np.zeros(N_BKG), z_train), axis=0)
# Define Pivot
net = F3Classifier(n_in=2, n_out=1)
adv_net = F3GausianMixtureDensity(n_in=1, n_components=5)
# net_criterion = nn.CrossEntropyLoss()
net_criterion = nn.BCEWithLogitsLoss()
adv_criterion = ADVLoss()
# ADAM
# Reducing optimizer inertia with lower beta1 and beta2 help with density network
net_optimizer = optim.Adam(net.parameters(), lr=1e-3, betas=(0.5, 0.9))
adv_optimizer = optim.Adam(adv_net.parameters(), lr=1e-3, betas=(0.5, 0.9))
# SGD
# net_optimizer = optim.SGD(net.parameters(), lr=1e-3)
# adv_optimizer = optim.SGD(adv_net.parameters(), lr=1e-3)
# model = PivotClassifier(net, adv_net, net_criterion, adv_criterion, TRADE_OFF, net_optimizer, adv_optimizer,
model = PivotBinaryClassifier(net,
adv_net,
net_criterion,
adv_criterion,
TRADE_OFF,
net_optimizer,
adv_optimizer,
n_net_pre_training_steps=500,
n_adv_pre_training_steps=3000,
n_steps=2000,
n_recovery_steps=20,
batch_size=128,
rescale=True,
cuda=False,
verbose=0)
# Train Pivot
model.fit(X_train, y_train, z_train)
# Generate testing data
generator = Generator(test_seed)
z_test = generator.sample_nuisance(N_SIG)
X_test, y_test = generator.sample_event(z_test, mix, N_SAMPLES)
# Evaluation
r = evaluate_neural_net(model,
prefix='train',
model_name=model_name,
directory=directory)
results.update(r)
evaluate_pivotal(model,
generator,
prefix='test',
model_name=model_name,
directory=directory)
r = evaluate_classifier(model,
X_train,
y_train,
prefix='train',
model_name=model_name,
directory=directory)
results.update(r)
r = evaluate_classifier(model,
X_test,
y_test,
prefix='test',
model_name=model_name,
directory=directory)
results.update(r)
return results
import numpy as np
import read_dataset as rd
import evaluation as e
from sklearn.ensemble import RandomForestClassifier
from sklearn import cross_validation
# loading training data
print('Loading training data')
X,y = rd.read_train()
X,y = rd.nudge_dataset(X,y)
scores = []
scores_std = []
#just so we know it didn't blow up or something
print('Start learning...')
#The last few might be excessive.
forests = [10, 15, 20, 25, 30, 40, 50, 70, 100, 125, 150, 175, 200, 250]
for tree in forests:
print("This forest has {} trees!".format(tree))
classifier = RandomForestClassifier(tree)
#score = cross_validation.cross_val_score(classifier, X, y)
#scores.append(np.mean(score))
#scores_std.append(np.std(score))
name = "plots_extended/RandomForest_{}_trees.png".format(tree)
e.evaluate_classifier(classifier,X,y, name=name)
#print('Score: ', np.array(scores))
#print('Std : ', np.array(scores_std))
options['result_dir']))
options = load_options(options)
print("Switching to the most recent version of the network saved in {}".format(
options['result_dir']))
options['epoch'] = get_current_epoch(options['result_dir'])
print("Loading dataset from file {}".format(options['dataset']))
dataloader = CustomDataloader(last_batch=True, shuffle=False, **options)
print("Loading neural network weights...")
nets = build_networks(dataloader.num_classes, **options)
examples.run_example_code(nets, dataloader, **options)
print("Evaluating the accuracy of the classifier on the {} fold".format(
options['fold']))
new_results = evaluate_classifier(nets, dataloader, verbose=False, **options)
print("Results from evaluate_classifier:")
pprint(new_results)
acquire_lock(options['result_dir'])
try:
print("Saving results in {}".format(options['result_dir']))
filename = os.path.join(options['result_dir'], 'example_results.json')
with open(filename, 'w') as fp:
fp.write(json.dumps(new_results, indent=2))
finally:
release_lock(options['result_dir'])
lr_adasyn = train_classifier(X_train, y_train, log_reg, lr_adasyn_params ,"ADASYN") # In[110]: y_test = np.array(y_test).reshape(1, -1) # ##### Evaluation Logistic Regression + SMOTE # In[111]: y_lr_smote_pred = lr_smote.predict(X_test).reshape(1, -1) evaluate_classifier(y_test, y_lr_smote_pred) # ##### Evaluation Logistic Regression + Borderline # In[112]: y_lr_borderline_pred = lr_borderline.predict(X_test).reshape(1, -1) evaluate_classifier(y_test, y_lr_borderline_pred) # ##### Evaluation Logistic Regression + ADASYN # In[113]:
import numpy as np
import read_dataset as rd
import evaluation as e
from sklearn.ensemble import RandomForestClassifier
from sklearn import cross_validation
# loading training data
print('Loading training data')
X, y = rd.read_train()
X, y = rd.nudge_dataset(X, y)
scores = []
scores_std = []
#just so we know it didn't blow up or something
print('Start learning...')
#The last few might be excessive.
forests = [10, 15, 20, 25, 30, 40, 50, 70, 100, 125, 150, 175, 200, 250]
for tree in forests:
print("This forest has {} trees!".format(tree))
classifier = RandomForestClassifier(tree)
#score = cross_validation.cross_val_score(classifier, X, y)
#scores.append(np.mean(score))
#scores_std.append(np.std(score))
name = "plots_extended/RandomForest_{}_trees.png".format(tree)
e.evaluate_classifier(classifier, X, y, name=name)
#print('Score: ', np.array(scores))
#print('Std : ', np.array(scores_std))
