def process_batch(self):
files = self.batchlist
for f in files:
proc = np.load(f, allow_pickle=True).item()
savename = process.run(proc['filenames'], parent=None, proc=proc, savepath=proc['save_path'])
if len(files)==1:
self.openProc(savename)
def process_ROIs(self):
self.sbin = int(self.binSpinBox.value())
# save running parameters as defaults
ops = self.save_ops()
if len(self.save_path) > 0:
savepath = self.save_path
else:
savepath = None
print(savepath)
savename = process.run(self.filenames, self, savepath=savepath)
self.openProc(savename)
def main():
ops = np.load('ops.npy')
ops = ops.item()
if __name__ == '__main__':
parser = argparse.ArgumentParser(description='Movie files')
parser.add_argument('--ops', default=[], type=str, help='options')
parser.add_argument('--movie', default=[], type=str, help='moviefile')
parser.add_argument('--savedir', default=[], type=str, help='savedir')
args = parser.parse_args()
if len(args.movie) > 0:
moviefile = args.movie
else:
moviefile = None
if len(args.savedir) > 0:
savedir = args.savedir
else:
savedir = None
ops = {}
if len(args.ops) > 0:
ops = np.load(args.ops)
ops = ops.item()
if len(args.movie) > 0:
process.run(args.movie, ops)
else:
gui.run(moviefile, savedir)