class Role(MINDSObject):
"""
The role of a person within an experiment.
"""
_path = "/prov/role/v1.0.0"
type = ["minds:Role"]
fields = (
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class Sex(UnimindsOption):
"""
The sex of an animal or person from whom/which data were obtained.
"""
_path = "/options/sex/v1.0.0"
type = ["uniminds:Sex"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class PublicationIdType(UnimindsOption):
"""
A type of publication identifier (e.g. ISBN, DOI)
"""
_path = "/options/publicationidtype/v1.0.0"
type = ["uniminds:Publicationidtype"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class ModelFormat(UnimindsOption):
"""
Programming or markup language used to describe or create a model
"""
_path = "/options/modelformat/v1.0.0"
type = ["uniminds:Modelformat"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class ModelScope(UnimindsOption):
"""
'What is being modelled': a protein, a single cell, the entire brain, etc.
"""
_path = "/options/modelscope/v1.0.0"
type = ["uniminds:Modelscope"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class MethodCategory(UnimindsOption):
"""
A category used for classifying experimental methods (see :class:`ExperimentalMethod`)
"""
_path = "/options/methodcategory/v1.0.0"
type = ["uniminds:Methodcategory"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class MimeType(UnimindsOption):
"""
Media type of a document
"""
_path = "/options/mimetype/v1.0.0"
type = ["uniminds:Mimetype"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class FileBundleGroup(UnimindsObject):
"""
A collection of file bundles (see :class:`FileBundle`)
"""
_path = "/options/filebundlegroup/v1.0.0"
type = ["uniminds:Filebundlegroup"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class Handedness(UnimindsOption):
"""
Preferred hand (left, right, or ambidextrous)
"""
_path = "/options/handedness/v1.0.0"
type = ["uniminds:Handedness"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class EthicsAuthority(UnimindsOption):
"""
A entity legally authorised to approve or deny permission to conduct an experiment on ethical grounds.
"""
_path = "/options/ethicsauthority/v1.0.0"
type = ["uniminds:Ethicsauthority"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class EmbargoStatus(UnimindsOption):
"""
Information about the embargo period during which a given dataset cannot be publicly shared.
"""
_path = "/options/embargostatus/v1.0.0"
type = ["uniminds:Embargostatus"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class Disability(UnimindsOption):
"""
A disability or disease.
"""
_path = "/options/disability/v1.0.0"
type = ["uniminds:Disability"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class Species(UnimindsOption):
"""
The species of an experimental subject, expressed with the binomial nomenclature.
"""
_path = "/options/species/v1.0.0"
type = ["uniminds:Species"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class Strain(UnimindsOption):
"""
An inbred sub-population within a species.
"""
_path = "/options/strain/v1.0.0"
type = ["uniminds:Strain"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class Country(UnimindsObject):
"""
docstring
"""
_path = "/options/country/v1.0.0"
type = ["uniminds:Country"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class Doi(UnimindsObject):
"""
docstring
"""
_path = "/options/doi/v1.0.0"
type = ["uniminds:Doi"]
fields = (
Field("citation", basestring, "https://schema.hbp.eu/uniminds/citation", required=False, multiple=False),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class Modality(MINDSObject):
"""
A recording modality.
"""
_path = "/core/modality/v1.0.0"
type = ["minds:Modality"]
fields = (
# Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class StudyTargetSource(UnimindsObject):
"""
docstring
"""
_path = "/options/studytargetsource/v1.0.0"
type = ["uniminds:Studytargetsource"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class ExperimentalPreparation(UnimindsObject):
"""
docstring
"""
_path = "/options/experimentalpreparation/v1.0.0"
type = ["uniminds:Experimentalpreparation"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class BrainStructure(UnimindsOption):
"""
A sub-structure or region with the brain.
"""
_path = "/options/brainstructure/v1.0.0"
type = ["uniminds:Brainstructure"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class CellularTarget(UnimindsOption):
"""
The type of neuron or glial cell that is the focus of the study.
"""
_path = "/options/cellulartarget/v1.0.0"
type = ["uniminds:Cellulartarget"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class AgeCategory(UnimindsOption):
"""
An age category, e.g. "adult", "juvenile"
"""
_path = "/options/agecategory/v1.0.0"
type = ["uniminds:Agecategory"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class StudyTargetType(UnimindsOption):
"""
Category of study target (see :class:`StudyTarget`)
"""
_path = "/options/studytargettype/v1.0.0"
type = ["uniminds:Studytargettype"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class StudyTargetSource(UnimindsOption):
"""
Context of a study target, e.g. if the target is a brain region, the source might be an atlas.
"""
_path = "/options/studytargetsource/v1.0.0"
type = ["uniminds:Studytargetsource"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class AbstractionLevel(UnimindsOption):
"""
Level of abstraction for a neuroscience model, e.g.rate neurons, spiking neurons
"""
_path = "/options/abstractionlevel/v1.0.0"
type = ["uniminds:Abstractionlevel"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class TissueSample(UnimindsObject):
"""
docstring
"""
_path = "/core/tissuesample/v1.0.0"
type = ["uniminds:Tissuesample"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False),
Field("subject", Subject, "https://schema.hbp.eu/uniminds/subject", required=False, multiple=False))
class Organization(UnimindsObject):
"""
docstring
"""
_path = "/options/organization/v1.0.0"
type = ["uniminds:Organization"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False),
Field("created_as", basestring, "https://schema.hbp.eu/uniminds/createdAs", required=False, multiple=False))
class FundingInformation(UnimindsObject):
"""
docstring
"""
_path = "/core/fundinginformation/v1.0.0"
type = ["uniminds:Fundinginformation"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("grant_id", basestring, "https://schema.hbp.eu/uniminds/grantId", required=False, multiple=False),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False))
class FileAssociation(UnimindsObject):
"""
docstring
"""
_path = "/core/fileassociation/v1.0.0"
type = ["uniminds:Fileassociation"]
fields = (
Field("from", File, "https://schema.hbp.eu/linkinginstance/from", required=False, multiple=False),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False),
Field("to", Dataset, "https://schema.hbp.eu/linkinginstance/to", required=False, multiple=False))
class Organization(UnimindsObject):
"""
An organization associated with research data or models, e.g. a university, lab or department.
"""
_path = "/options/organization/v1.0.0"
type = ["uniminds:Organization"]
fields = (
Field("alternatives", KGObject, "https://schema.hbp.eu/inference/alternatives", required=False, multiple=True),
Field("identifier", basestring, "http://schema.org/identifier", required=False, multiple=True),
Field("name", basestring, "http://schema.org/name", required=False, multiple=False),
Field("created_as", basestring, "https://schema.hbp.eu/uniminds/createdAs", required=False, multiple=False))