def test_read_missing_id(self, mock_get_store):
"""Raises an error when the id was not provided at init"""
resource = Patient()
mock_get_store.return_value.normalize_resource.return_value = resource
r = BaseResource(resource=resource)
with pytest.raises(BadRequest, match="Resource ID is required"):
r.read()
assert mock_get_store.return_value.read.call_count == 0
def test_create_extra_id(self, mock_get_store):
"""Accepts the resource data when an id was provided"""
resource = Patient(id="test")
mock_get_store.return_value.normalize_resource.return_value = resource
mock_get_store.return_value.create.return_value = resource
mock_get_store.return_value.read.return_value = None
r = BaseResource(resource=resource)
r.create()
assert r.id == "test"
assert r.resource == resource
def test_delete_missing_id(self, mock_get_store):
"""Raises an error when the patch data is not provided"""
resource = Patient()
mock_get_store.return_value.normalize_resource.return_value = resource
r = BaseResource(resource=resource)
with pytest.raises(
BadRequest,
match="Resource ID is required to delete it",
):
r = r.delete()
assert mock_get_store.return_value.update.call_count == 0
def test_delete(self, mock_get_store):
"""Calls the delete method of the fhirstore client"""
resource = Patient(id="test")
mock_get_store.return_value.normalize_resource.return_value = resource
r = BaseResource(resource=resource)
r.delete()
mock_get_store.return_value.delete.assert_called_once_with(
"BaseResource", "test")
assert r.resource is None
assert r.id is None
def test_patch_missing_id(self, mock_get_store):
"""Raises an error when the resource id was not provided at init"""
resource = Patient(gender="test")
mock_get_store.return_value.normalize_resource.return_value = resource
r = BaseResource(resource=resource)
with pytest.raises(
BadRequest,
match="Resource ID is required to patch a resource",
):
r.patch({"some": "patch"})
assert mock_get_store.return_value.patch.call_count == 0
def test_patch_missing_data(self, mock_get_store):
"""Raises an error when the patch data is not provided"""
resource = Patient(id="test")
mock_get_store.return_value.normalize_resource.return_value = resource
r = BaseResource(id="test")
with pytest.raises(
BadRequest,
match="Patch data is required to patch a resource",
):
r.patch(None)
assert mock_get_store.return_value.patch.call_count == 0
def test_read(self, mock_get_store):
"""Test read method.
Calls the read method of the fhirstore client
and registers the resource.
"""
resource = Patient(id="test")
mock_get_store.return_value.normalize_resource.return_value = resource
mock_get_store.return_value.read.return_value = resource
r = BaseResource(id="test")
r.read()
mock_get_store.return_value.read.assert_called_once_with(
"BaseResource", "test")
assert r.resource == resource
def test_create(self, mock_uuid, mock_get_store):
"""Test create method.
Calls the create method of the fhirstore client
and registers the ID
"""
resource = Patient(gender="male")
mock_get_store.return_value.normalize_resource.return_value = resource
mock_get_store.return_value.create.return_value = resource
mock_get_store.return_value.read.return_value = None
r = BaseResource(resource=resource)
r.create()
mock_get_store.return_value.create.assert_called_once_with(resource)
assert r.id == "uuid"
assert r.resource == resource
def test_search_params(self, mock_get_store):
"""
Calls the search method of the fhirstore client using `params`
"""
resource = Patient(id="test")
mock_get_store.return_value.normalize_resource.return_value = resource
mock_get_store.return_value.search.return_value = resource
r = BaseResource(resource=resource)
params = MultiDict((("name", "Vincent"), ))
res = r.search(params=params)
assert res == resource
mock_get_store.return_value.search.assert_called_once_with(
"BaseResource", as_json=True, params=params, query_string=None)
assert r.resource == resource
assert r.id == resource.id
def test_search_qs(self, mock_get_store):
"""
Calls the search method of the fhirstore client using `query_string`
"""
resource = Patient(id="test")
mock_get_store.return_value.normalize_resource.return_value = resource
mock_get_store.return_value.search.return_value = resource
r = BaseResource(resource=resource)
res = r.search(query_string="name=Vincent")
assert res == resource
mock_get_store.return_value.search.assert_called_once_with(
"BaseResource",
as_json=True,
params=None,
query_string="name=Vincent")
assert r.resource == resource
assert r.id == resource.id
# page_file = "temp/pg"+str(count)+".png"
# page.save(page_file, "PNG")
# count = count+1
# for page_num in range(count):
# page_file = "temp/pg"+str(page_num)+".png"
# score_assessment_form(page_file, page_num,
# wThresh=W_THRESH, hThresh=H_THRESH)
# print("Raw Score:", subtotal)
# creating FHIR resource for patient record
pat = Patient({
"id": "1",
"name": [{
"given": ["John"],
"family": "Doe"
}],
"birthDate": "2019-01-24"
})
print(pat)
enc = Encounter()
enc.subject = pat
docref_json = {
"resourceType": "DocumentReference",
}
doc = DocumentReference()
obs = Observation()
print("--finish--")