def get_patient_detail(fhir, pat_id):
pat = Patient.read(pat_id, fhir.server)
# If set, use this to query on a fixed time point.
if REF_DATE:
ref_date = REF_DATE
else:
ref_date = datetime.now()
# Only the last 24 hours are considered.
past24 = ref_date - timedelta(days=1)
# Vital signs for the patient. Includes SBP, HR, RR, satO2, temp
search = Observation.where(struct={
'subject': pat_id,
'category': VITAL_SIGNS_CATEGORY,
'date': {
'$gte': past24.strftime('%Y-%m-%dT%H:%M:%SZ'),
},
})
bp = []
hr = []
rr = []
temp = []
o2 = []
# Implicitly fetches pages on demand.
for r in search.perform_resources(fhir.server):
# Resource code.
system = r.code.coding[0].system
code = r.code.coding[0].code
if system != LOINC_SYSTEM:
continue
# Extract systolic component from blood pressure.
if code == LOINC_BP:
sbp = None
dbp = None
for c in r.component:
if c.code.coding[0].code == LOINC_SBP:
sbp = {
'time': r.effectiveDateTime.isostring,
'value': c.valueQuantity.value,
'unit': c.valueQuantity.unit,
}
elif c.code.coding[0].code == LOINC_DBP:
dbp = {
'time': r.effectiveDateTime.isostring,
'value': c.valueQuantity.value,
'unit': c.valueQuantity.unit,
}
if sbp or dbp:
bp.append({
'systolic': sbp,
'diastolic': dbp,
})
elif code == LOINC_HR:
hr.append({
'time': r.effectiveDateTime.isostring,
'value': r.valueQuantity.value,
'unit': r.valueQuantity.unit,
})
elif code == LOINC_RR:
rr.append({
'time': r.effectiveDateTime.isostring,
'value': r.valueQuantity.value,
'unit': r.valueQuantity.unit,
})
elif code == LOINC_TEMP:
temp.append({
'time': r.effectiveDateTime.isostring,
'value': r.valueQuantity.value,
'unit': r.valueQuantity.unit,
})
elif code == LOINC_O2:
o2.append({
'time': r.effectiveDateTime.isostring,
'value': r.valueQuantity.value,
'unit': r.valueQuantity.unit,
})
mrn = None
if pat.identifier:
mrn = pat.identifier[0].value
return {
'id': pat_id,
'mrn': mrn,
'name': parse_human_name(pat.name[0]),
'birth_date': pat.birthDate.isostring,
'gender': pat.gender,
'measures': {
'heart_rate': hr,
'respiratory_rate': rr,
'temperature': temp,
'pulse_ox': o2,
'blood_pressure': bp,
'mental_status': None,
'eating_status': None,
},
}
from fhirclient.client import FHIRServer
from fhirclient.models.patient import Patient
server = FHIRServer(None, "http://hapi.fhir.org/baseR4")
p = Patient.read("921009", server)
print("-" * 40)
print("Patient Information")
print("-" * 40)
print(f"NAME: {p.name[0].text}")
print(f"BIRTHDATE: {p.birthDate.date.isoformat()}")
from fhirclient.models.condition import Condition
# from fhirclient.models.bundle import Bundle
# conditionBundle = Condition.where( { "subject": "921009" } ).perform( server )
# if conditionBundle.entry is None:
conditions = Condition.where({"subject": "921009"}).perform_resources(server)
if not conditions:
print("PROBLEM LIST: None")
else:
print("PROBLEM LIST:")
i = 1
# for entry in conditionBundle.entry:
for cond in conditions:
# cond = entry.resource
print(
f"{i:>3d}. {cond.code.text:<40s} Severity: {cond.severity.text:<12s}"
)
i += 1
from fhirclient.client import FHIRServer
from fhirclient.models.patient import Patient
server = FHIRServer(None, "http://hapi.fhir.org/baseDstu3")
p = Patient.read("2716055", server)
print("-" * 40)
print("Patient Information")
print("-" * 40)
print(f"NAME: {p.name[0].text}")
print(f"BIRTHDATE: {p.birthDate.date.isoformat()}")
from fhirclient.models.condition import Condition
conditions = Condition.where({"subject": "2716055"}).perform_resources(server)
if not conditions:
print("PROBLEM LIST: None")
else:
print("PROBLEM LIST:")
i = 1
for cond in conditions:
print(
f"{i:>3d}. {cond.code.text:<40s} Severity: {cond.severity.text:<12s}"
)
i += 1
from fhirclient.models.encounter import Encounter
encounters = Encounter.where({"subject": "2716055"}).perform_resources(server)
if not encounters:
print("ENCOUNTER LIST: None")
else: