def test_transform_features_all_codes(self):
file_processor = FileProcessor(self.input_file_path)
file_processor.transform_features(self.output_file_path)
job_ids, feature_codes, features = read_test_data_as_arrays(
self.input_file_path)
means = features.mean(axis=0)
expected_z_scores = stats.zscore(
features, axis=0, ddof=1) # using sample standard deviation
expected_argmaxs = np.argmax(features, axis=1)
expected_maxs = np.amax(features, axis=1)
expected_diffs = np.abs(expected_maxs - means[expected_argmaxs])
line_index = 0
with open(self.output_file_path) as f:
next(f)
for line in f:
job_id, z_scores, argmax, diff = _parse_transformed_line(line)
np.testing.assert_equal(job_id, job_ids[line_index])
np.testing.assert_allclose(z_scores,
expected_z_scores[line_index])
np.testing.assert_equal(argmax, expected_argmaxs[line_index])
np.testing.assert_almost_equal(diff,
expected_diffs[line_index])
line_index += 1
def test_transform_features_some_codes(self):
selected_codes = random.sample(self.feature_codes, k=2)
file_processor = FileProcessor(self.input_file_path)
file_processor.transform_features(self.output_file_path,
selected_codes)
job_ids, feature_codes, features = read_test_data_as_arrays(
self.input_file_path)
selected_indexes = []
for code in selected_codes:
indexes = np.where(feature_codes == code)[0].tolist()
selected_indexes += indexes
selected_indexes = sorted(selected_indexes)
selected_job_ids = job_ids[selected_indexes]
selected_features = features[selected_indexes]
means = selected_features.mean(axis=0)
expected_z_scores = stats.zscore(
selected_features, axis=0,
ddof=1) # using sample standard deviation
expected_argmaxs = np.argmax(selected_features, axis=1)
expected_maxs = np.amax(selected_features, axis=1)
expected_diffs = np.abs(expected_maxs - means[expected_argmaxs])
line_index = 0
with open(self.output_file_path) as f:
next(f)
for line in f:
job_id, z_scores, argmax, diff = _parse_transformed_line(line)
np.testing.assert_equal(job_id, selected_job_ids[line_index])
np.testing.assert_allclose(z_scores,
expected_z_scores[line_index])
np.testing.assert_equal(argmax, expected_argmaxs[line_index])
np.testing.assert_almost_equal(diff,
expected_diffs[line_index])
line_index += 1
self.assertEqual(line_index, len(selected_indexes))
from pathlib import Path
import os
from file_processor import FileProcessor
if __name__ == "__main__":
current_path = Path(os.path.dirname(os.path.realpath(__file__)))
input_file_path = current_path / 'resources' / 'test.tsv'
out_file_path = current_path / 'resources' / 'test_proc.tsv'
file_processor = FileProcessor(input_file_path)
file_processor.transform_features(out_file_path)
print("Results saved to ", out_file_path)
