Python read_line_of_words Beispiele

Beispiel #1

Datei: rosalind_swat.py Projekt: cowboysmall-comp/rosalind

def main(argv):
    identifiers = files.read_line_of_words(argv[0])

    for identifier in identifiers:
        write_to_file(identifier)

    print pairwise_local_alignment(identifiers[0], identifiers[1])

Beispiel #2

Datei: rosalind_frmt.py Projekt: cowboysmall-comp/rosalind

def main(argv):
    ids = files.read_line_of_words(argv[0])

    Entrez.email = "*****@*****.**"

    handle = Entrez.efetch(db='nucleotide', id=ids, rettype='fasta')
    records = SeqIO.parse(handle, 'fasta')
    shortest = min(records, key=len)

    print shortest.format('fasta')

Beispiel #3

def main(argv):
    leaves = files.read_line_of_words(argv[0])

    print '\n'.join('(%s)%s;' % (enum, leaves[0])
                    for enum in tree.enumerate_unrooted(leaves[1:]))

Beispiel #4

Datei: rosalind_ini6.py Projekt: cowboysmall-comp/rosalind

def main(argv):
    words = files.read_line_of_words(argv[0])
    freq = arrays.frequency_table(words)

    print '\n'.join('%s %s' % (w, f) for w, f in freq.iteritems())

Beispiel #5

def main(argv):
    id1, id2 = files.read_line_of_words(argv[0])

    print pairwise_global_alignment(id1, id2)